PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0397s00030.1
Common NameLR48_Vigan503s004400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 421aa    MW: 46218.1 Da    PI: 7.5182
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0397s00030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30162218259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK+vkgs+ +rsYY+Ct+++Cpvkkk+ers  +++v+ i+Y+geHnh+
  Vang0397s00030.1 162 DDGYNWRKYGQKHVKGSDLSRSYYKCTHPNCPVKKKLERSL-EGHVTAIIYKGEHNHQ 218
                       8****************************************.***************8 PP
2WRKY107.95e-34310368159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+
  Vang0397s00030.1 310 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHD 368
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.3E-26150219IPR003657WRKY domain
SuperFamilySSF1182901.83E-23159219IPR003657WRKY domain
PROSITE profilePS5081120.369161220IPR003657WRKY domain
SMARTSM007741.7E-30161219IPR003657WRKY domain
PfamPF031068.8E-23162218IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-37296370IPR003657WRKY domain
SuperFamilySSF1182906.67E-30302370IPR003657WRKY domain
PROSITE profilePS5081138.836305370IPR003657WRKY domain
SMARTSM007741.3E-39310369IPR003657WRKY domain
PfamPF031062.5E-26311368IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    Send to blast
MVGGGNGEGA PPSTAVRPRS DLRPRATAES VFNGGDAAGY SPGPMTLLSS LFGDGDEYKS  60
FSEFLAGAMM DPTPPRFFSD SPSQGHFGMT QQQMLAQVTS HSNVQIQAED PFSAAVPATS  120
LTQVPTTIST TVSASGVTES FGFSHSDKKL HSSAVIVDKP NDDGYNWRKY GQKHVKGSDL  180
SRSYYKCTHP NCPVKKKLER SLEGHVTAII YKGEHNHQRK TTKGTLTSTE NSDKLKEERS  240
SHSVSQMDLE SGTSDSEEVG DHETEMDEKN DEPDPKRRNT EGRLQDPASL HRTVAEPRII  300
VQTTSEVDLL DDGYRWRKYG QKVVKGNPYP RSYYKCTTPG CNVRKHVERA STDPKAVITT  360
YEGKHNHDVP AAKTNSHTLA NNSSTQLKAQ NAMPDEKMHS FRGSEQRPVA SLRLKEEKIT  420
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-44162371878Probable WRKY transcription factor 4
2lex_A2e-44162371878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0397s00030.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408554.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9ZQ701e-123WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A0L9TDB80.0A0A0L9TDB8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R2C60.0A0A0S3R2C6_PHAAN; Uncharacterized protein
STRINGXP_007157850.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-136WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]