PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g00740.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 184aa MW: 19830.3 Da PI: 4.9216

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g00740.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.8	2.9e-28	1	110	24	114
TCP 24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............................. 88 ++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ Vang03g00740.1 1 MPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSFRSSGSTLSAPpsnylrkryredlfkddninsqsqnesgd 95 9*****************************************99999888766666666665555566667777777666666654322222222 PP TCP 89 kaaksaakskksqksaasalnlakes 114 +s+k ++ l+l k++ Vang03g00740.1 96 G---------SSPKTPN--LQLPKQQ 110 1.........2222222..3333322 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	21.372	1	39	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	9.9E-28	1	99	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MPATCAARVF QLTRELGHKS DGETIEWLLQ QAEPAIIAAT GTGTIPANFS TLNVSFRSSG 60 STLSAPPSNY LRKRYREDLF KDDNINSQSQ NESGDGSSPK TPNLQLPKQQ PQQQNEAGSG 120 LLRPTNLLPA TAMFNLPSAL EFQGARAGSL QLGSMLMPQQ PSQHLGLAIL EVELNEFVIS 180 ECF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g00740.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	1e-111	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004485466.1	6e-51	transcription factor TCP8
Swissprot	Q9LQF0	1e-36	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A3Q8TD56	7e-53	A0A3Q8TD56_DIOKA; Transcription factor TCP1
STRING	XP_004485466.1	2e-50	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-39	TCP family protein