PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g00910.2

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

C3H

Protein Properties

Length: 643aa MW: 75633.4 Da PI: 7.1012

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g00910.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.5	3.6e-06	187	206	6	25
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC++ H Vang03g00910.2 187 CPFHLKTGACRFGRRCSRVH 206 ******************99 PP
2	zf-CCCH	29.9	9.6e-10	349	376	1	26
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C ++++G tC++G C+F+H+ Vang03g00910.2 349 WKVAICGEYMKSGfkTCSRGTACNFIHC 376 899************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	11.92	181	209	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.6	182	208	IPR000571	Zinc finger, CCCH-type
PRINTS	PR01848	2.5E-28	187	206	IPR009145	U2 auxiliary factor small subunit
PRINTS	PR01848	2.5E-28	206	226	IPR009145	U2 auxiliary factor small subunit
Gene3D	G3DSA:3.30.70.330	9.8E-18	213	232	IPR012677	Nucleotide-binding alpha-beta plait domain
Gene3D	G3DSA:3.30.70.330	9.8E-18	264	344	IPR012677	Nucleotide-binding alpha-beta plait domain
SuperFamily	SSF54928	6.58E-13	278	346	IPR012677	Nucleotide-binding alpha-beta plait domain
PRINTS	PR01848	2.5E-28	303	325	IPR009145	U2 auxiliary factor small subunit
PRINTS	PR01848	2.5E-28	330	354	IPR009145	U2 auxiliary factor small subunit
PROSITE profile	PS50103	10.878	348	378	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.5E-5	348	377	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.1E-7	349	376	IPR000571	Zinc finger, CCCH-type
PRINTS	PR01848	2.5E-28	368	380	IPR009145	U2 auxiliary factor small subunit

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000398	Biological Process	mRNA splicing, via spliceosome
GO:0089701	Cellular Component	U2AF
GO:0000166	Molecular Function	nucleotide binding
GO:0003723	Molecular Function	RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 643 aa Download sequence Send to blast
MEDGKSMGRK EKRKAMKKMK RKQTRKEAAE SERREEEDRL NDPEEQRRMQ LLEQEEAERM 60 QRDTILFQER EKAFMDMIIT RQRQQQQQER DQEQSIDHDN EFEYVVQEEG PPEIIWQGNE 120 IIFNKKQLRV RVPDTDTHNN FSQQNDDIRP TSNPLPPESE SESRTQNLQD VAEQIPNFGT 180 EQDKAHCPFH LKTGACRFGR RCSRVHFIPD KSSTLLMENM YNGPGLACDR DQDEGLEVCS 240 FTSSFIARLI LEANDFGLAC SMLKILAVYT DEEIDRCFEE FXEDVHTEFL KFGEIVNFKV 300 CKNGSFHLRG NVYVQYKALD SALLAANLIN RHDFTGKRVT CQFVNLTRWK VAICGEYMKS 360 GFKTCSRGTA CNFIHCFRNP GGDYEWADSD KPPPKFWVEK MIALFGYSDD YETSREQGNF 420 SLSKTDSDRY HCRRSRSRET DRLSCGHSGR RKHEDERKQR TPYEDRNASL KNTHKRKSRG 480 TTDTDSDREW LEKEEIRERR HEYTRNGSFN KRRDENSRSH EEDSDMDCDT RDNEKQHGRN 540 PRKCDNDIRV WINEAAGLDG DRDVRKHRIR ESSGHQSGDA SESNKDLFGR VEMETLHDHF 600 RKTYSHRRSG VQVSVKGRDQ NDKVDRDGSR KDSYKRDHHK RK*

Sequence ? help Back to Top

Protein Sequence Length: 643 aa Download sequence Send to blast

MEDGKSMGRK EKRKAMKKMK RKQTRKEAAE SERREEEDRL NDPEEQRRMQ LLEQEEAERM  60
QRDTILFQER EKAFMDMIIT RQRQQQQQER DQEQSIDHDN EFEYVVQEEG PPEIIWQGNE  120
IIFNKKQLRV RVPDTDTHNN FSQQNDDIRP TSNPLPPESE SESRTQNLQD VAEQIPNFGT  180
EQDKAHCPFH LKTGACRFGR RCSRVHFIPD KSSTLLMENM YNGPGLACDR DQDEGLEVCS  240
FTSSFIARLI LEANDFGLAC SMLKILAVYT DEEIDRCFEE FXEDVHTEFL KFGEIVNFKV  300
CKNGSFHLRG NVYVQYKALD SALLAANLIN RHDFTGKRVT CQFVNLTRWK VAICGEYMKS  360
GFKTCSRGTA CNFIHCFRNP GGDYEWADSD KPPPKFWVEK MIALFGYSDD YETSREQGNF  420
SLSKTDSDRY HCRRSRSRET DRLSCGHSGR RKHEDERKQR TPYEDRNASL KNTHKRKSRG  480
TTDTDSDREW LEKEEIRERR HEYTRNGSFN KRRDENSRSH EEDSDMDCDT RDNEKQHGRN  540
PRKCDNDIRV WINEAAGLDG DRDVRKHRIR ESSGHQSGDA SESNKDLFGR VEMETLHDHF  600
RKTYSHRRSG VQVSVKGRDQ NDKVDRDGSR KDSYKRDHHK RK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4yh8_A	8e-25	178	403	9	182	Splicing factor U2AF 23 kDa subunit
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g00910.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017436310.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X1
Refseq	XP_017436311.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 5 isoform X2
Swissprot	Q9SY74	1e-157	C3H5_ARATH; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A0S3S1J1	0.0	A0A0S3S1J1_PHAAN; Uncharacterized protein
STRING	XP_007148590.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4713	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10320.1	1e-131	C3H family protein

Publications ? help Back to Top
Lorković ZJ,Wieczorek Kirk DA,Lambermon MH,Filipowicz W Pre-mRNA splicing in higher plants. Trends Plant Sci., 2000. 5(4): p. 160-7 [PMID:10740297] Domon C,Lorković ZJ,Valcárcel J,Filipowicz W Multiple forms of the U2 small nuclear ribonucleoprotein auxiliary factor U2AF subunits expressed in higher plants. J. Biol. Chem., 1998. 273(51): p. 34603-10 [PMID:9852132]