PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g00950.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family B3
Protein Properties Length: 523aa    MW: 58060.3 Da    PI: 5.1656
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g00950.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.7e-1897181483
                     E-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                     +lt sd++++g +++ +++a+++       ++++ +  +l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L +gD ++F 
  Vang03g00950.2  97 TLTASDTSTHGGFSVLRRHADDClppldmtQQPPWQ--ELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFL 181
                     6899***********************975444444..8***********************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.3E-995198IPR003340B3 DNA binding domain
SuperFamilySSF1019361.06E-3297189IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-3097183IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1697181IPR003340B3 DNA binding domain
CDDcd100171.58E-1597180No hitNo description
PROSITE profilePS508639.234133197IPR003340B3 DNA binding domain
PfamPF023094.8E-6396434IPR033389AUX/IAA domain
PROSITE profilePS5174526.402398491IPR000270PB1 domain
SuperFamilySSF542779.16E-11399475No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MASAAPGSTN DALYKELWHA CAGPLVTLPR EGVRVYYFPQ GHMEQLEASM NQGLEQQMPS  60
FNLPSKILCK VVNVHLRAEP ETDEVYAQIT LLPEADTLTA SDTSTHGGFS VLRRHADDCL  120
PPLDMTQQPP WQELVATDLH GNEWHFRHIF RGQPRRHLLT TGWSVFVSSK KLVAGDAFIF  180
LRQVVQWDEP SSILRPDRVS PWELEPLVST PPTNSQPSQR NKRSRPPILP STLADSSLQG  240
VRKSPVDSAP FSYRDHQHGG DIYPPAKFNS TATGFLGFGG NCSASNKSIY WSSRTENSTE  300
SFLPVALKES GEKRNVTANG CRLFGIQLLD NSNGEESLPM VTLSGRLVDD VPLPSLDAES  360
DQHSEPSNIN RSDIPSVSCD VEKSCLRSPH ESQSRQIRSC TKVHMQGMAV GRAVDLTRFD  420
GYEDLLRKLE EMFDIKDELC GSPKKWQVVY TDNEDDMMMA GDDPWLEFCS IVRKIFIYTA  480
EEVKKLSPKI GLPISEEVKP SKMDSEAVVN PEDQSSIVGS GC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-11021827212Auxin response factor 1
4ldy_B1e-11021827212Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g00950.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021888215.10.0LOW QUALITY PROTEIN: auxin response factor 1-like
SwissprotQ8L7G01e-107ARFA_ARATH; Auxin response factor 1
TrEMBLA0A444ZC760.0A0A444ZC76_ARAHY; Uncharacterized protein
STRINGXP_007148592.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-111auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]