PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g01100.1
Common NameLR48_Vigan09g201300
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 249aa    MW: 27974 Da    PI: 6.6052
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g01100.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.91.5e-29137221186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ ev+ Li++r+++e+++r   +k+  Wee+s++m + g++rs+k+Ckekwen+nk+yk++  + kkr  ++s++cpyfd+l+
  Vang03g01100.1 137 RWPDVEVQSLITVRTSLEHKFRFMGSKGSIWEEISEAMYALGYNRSAKKCKEKWENINKYYKRTIGSGKKR-RQNSKSCPYFDELD 221
                     8****************************************************************999998.788889******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-4129193IPR009057Homeodomain-like
PROSITE profilePS500907.782130194IPR017877Myb-like domain
CDDcd122033.19E-27136200No hitNo description
PfamPF138372.2E-21136221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MDLFAADHFP VPDHVAPFPD SGDLLFPADL LSHCHNPQKL RPIRSLPSAL NAHPRPPDPI  60
ASGSGHTPSQ ESDSALDAED EEENDDNSSA SPEGNGPRKR RRKTVRKLEV EACSKREEGE  120
VEVNAHKEFN SDHSKSRWPD VEVQSLITVR TSLEHKFRFM GSKGSIWEEI SEAMYALGYN  180
RSAKKCKEKW ENINKYYKRT IGSGKKRRQN SKSCPYFDEL DILYRNGLLS IGNALSNTTD  240
APQIEQKE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g01100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435353.16e-99PREDICTED: trihelix transcription factor GT-2 isoform X2
TrEMBLA0A0L9VF923e-95A0A0L9VF92_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S4363e-95A0A0S3S436_PHAAN; Uncharacterized protein
STRINGXP_007147613.12e-89(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-33Trihelix family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]