PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g01200.1
Common NameLR48_Vigan09g198800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 371aa    MW: 41592.9 Da    PI: 7.6841
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g01200.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.94.9e-12583682374
            GRAS   2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +e+L +cA+avs+gd e a  ++++ l +++s  gdp+qRl ay++e+L+arl +s+s +ykal++++ +   s++ +++++++++++P+ kf++
  Vang03g01200.1   8 KEVLSRCAQAVSDGDIETAVGFMNNvLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPA---SKDLMSYMHILYQICPYWKFCY 99 
                     789********************8726788***************************************9...99999***************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     + aN  I ea+++e+r+HiiDf+i qG+QW+ L++aLasRp+g+p +R+Tg g         l  +g+rL+++A++++vpfef+  +a +  ++e
  Vang03g01200.1 100 VSANAVIGEAMQNESRIHIIDFQIAQGTQWMLLIHALASRPGGTPFIRVTGGGG--------LDIVGKRLSEYAKSCRVPFEFHS-AAMSGCEVE 185
                     ***************************************************999........9**********************.89999**** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                     le+L v pgEalaVn+ + lh+++desvs+e++rd++L+ vk+lsPkvv++veqe+++n+++F++rf+e+l+yysa+f+s+++ lpre+++ri+ 
  Vang03g01200.1 186 LENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRRVKNLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPREDKQRISA 280
                     *********************************************************************************************** PP

            GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     E+++++r+ivn++aceg er+erhe l+kWr+r+++aGF p pls+++++ ++ +lr+++++ yr+e+ +g+l+lgWk+r+L + SaWr
  Vang03g01200.1 281 EQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGN-YRLEHIDGALYLGWKRRALCTSSAWR 368
                     ************************************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.1751349IPR005202Transcription factor GRAS
PfamPF035141.7E-1228368IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MIPKLDLKEV LSRCAQAVSD GDIETAVGFM NNVLPKMVSV GGDPIQRLGA YMLEGLRARL  60
ESSGSLIYKA LKCEQPASKD LMSYMHILYQ ICPYWKFCYV SANAVIGEAM QNESRIHIID  120
FQIAQGTQWM LLIHALASRP GGTPFIRVTG GGGLDIVGKR LSEYAKSCRV PFEFHSAAMS  180
GCEVELENLV VLPGEALAVN FPFVLHHMPD ESVSTENHRD RLLRRVKNLS PKVVTLVEQE  240
SNTNTSPFFQ RFVETLSYYS AMFESIDVAL PREDKQRISA EQHCVARDIV NMIACEGPER  300
VERHELLGKW RSRFSMAGFA PCPLSSSVTN AVRNMLREFN GNYRLEHIDG ALYLGWKRRA  360
LCTSSAWRCY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-601336725378Protein SCARECROW
5b3h_A2e-601336724377Protein SCARECROW
5b3h_D2e-601336724377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g01200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437366.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_017437367.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0L9VF670.0A0A0L9VF67_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S3W70.0A0A0S3S3W7_PHAAN; Uncharacterized protein
STRINGXP_007147638.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]