 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Vang03g01200.5 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
|
| Family |
GRAS |
| Protein Properties |
Length: 381aa MW: 42737.1 Da PI: 7.258 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Vang03g01200.5 | genome | SNU | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 422.2 | 4.2e-129 | 8 | 378 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLar.lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
+e+L +cA+avs+gd e a ++++ l +++s gdp+qRl ay++e+L+arl +s+s +ykal++++ + s++ +++++++++++P+ kf++
Vang03g01200.5 8 KEVLSRCAQAVSDGDIETAVGFMNNvLPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPA---SKDLMSYMHILYQICPYWKFCY 99
789********************8726788***************************************9...99999***************** PP
GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
+ aN I ea+++e+r+HiiDf+i qG+QW+ L++aLasRp+g+p +R+Tgv+++es+ + l +g+rL+++A++++vpfef+ +a + +
Vang03g01200.5 100 VSANAVIGEAMQNESRIHIIDFQIAQGTQWMLLIHALASRPGGTPFIRVTGVDDSESFhaRGGGLDIVGKRLSEYAKSCRVPFEFHS-AAMSGCE 193
******************************************************9999889999***********************.89999** PP
GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
+ele+L v pgEalaVn+ + lh+++desvs+e++rd++L+ vk+lsPkvv++veqe+++n+++F++rf+e+l+yysa+f+s+++ lpre+++ri
Vang03g01200.5 194 VELENLVVLPGEALAVNFPFVLHHMPDESVSTENHRDRLLRRVKNLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPREDKQRI 288
*********************************************************************************************** PP
GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
+ E+++++r+ivn++aceg er+erhe l+kWr+r+++aGF p pls+++++ ++ +lr+++++ yr+e+ +g+l+lgWk+r+L + SaWr
Vang03g01200.5 289 SAEQHCVARDIVNMIACEGPERVERHELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGN-YRLEHIDGALYLGWKRRALCTSSAWR 378
**************************************************************77.*************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MIPKLDLKEV LSRCAQAVSD GDIETAVGFM NNVLPKMVSV GGDPIQRLGA YMLEGLRARL 60
ESSGSLIYKA LKCEQPASKD LMSYMHILYQ ICPYWKFCYV SANAVIGEAM QNESRIHIID 120
FQIAQGTQWM LLIHALASRP GGTPFIRVTG VDDSESFHAR GGGLDIVGKR LSEYAKSCRV 180
PFEFHSAAMS GCEVELENLV VLPGEALAVN FPFVLHHMPD ESVSTENHRD RLLRRVKNLS 240
PKVVTLVEQE SNTNTSPFFQ RFVETLSYYS AMFESIDVAL PREDKQRISA EQHCVARDIV 300
NMIACEGPER VERHELLGKW RSRFSMAGFA PCPLSSSVTN AVRNMLREFN GNYRLEHIDG 360
ALYLGWKRRA LCTSSAWRCY *
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
