PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g01200.6
Common NameLR48_Vigan09g198800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 352aa    MW: 39648.5 Da    PI: 7.7272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g01200.6genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS406.13.5e-124534927374
            GRAS  27 lselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisq 121
                     l +++s  gdp+qRl ay++e+L+arl +s+s +ykal++++ +   s++ +++++++++++P+ kf+++ aN  I ea+++e+r+HiiDf+i q
  Vang03g01200.6   5 LPKMVSVGGDPIQRLGAYMLEGLRARLESSGSLIYKALKCEQPA---SKDLMSYMHILYQICPYWKFCYVSANAVIGEAMQNESRIHIIDFQIAQ 96 
                     678999*************************************9...99999******************************************* PP

            GRAS 122 GlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll 214
                     G+QW+ L++aLasRp+g+p +R+Tgv+++es+  +   l  +g+rL+++A++++vpfef+  +a +  ++ele+L v pgEalaVn+ + lh+++
  Vang03g01200.6  97 GTQWMLLIHALASRPGGTPFIRVTGVDDSESFhaRGGGLDIVGKRLSEYAKSCRVPFEFHS-AAMSGCEVELENLVVLPGEALAVNFPFVLHHMP 190
                     ****************************9999889999***********************.89999**************************** PP

            GRAS 215 desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerh 309
                     desvs+e++rd++L+ vk+lsPkvv++veqe+++n+++F++rf+e+l+yysa+f+s+++ lpre+++ri+ E+++++r+ivn++aceg er+erh
  Vang03g01200.6 191 DESVSTENHRDRLLRRVKNLSPKVVTLVEQESNTNTSPFFQRFVETLSYYSAMFESIDVALPREDKQRISAEQHCVARDIVNMIACEGPERVERH 285
                     *********************************************************************************************** PP

            GRAS 310 etlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e l+kWr+r+++aGF p pls+++++ ++ +lr+++++ yr+e+ +g+l+lgWk+r+L + SaWr
  Vang03g01200.6 286 ELLGKWRSRFSMAGFAPCPLSSSVTNAVRNMLREFNGN-YRLEHIDGALYLGWKRRALCTSSAWR 349
                     ************************************77.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.621330IPR005202Transcription factor GRAS
PfamPF035141.2E-1215349IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MNNVLPKMVS VGGDPIQRLG AYMLEGLRAR LESSGSLIYK ALKCEQPASK DLMSYMHILY  60
QICPYWKFCY VSANAVIGEA MQNESRIHII DFQIAQGTQW MLLIHALASR PGGTPFIRVT  120
GVDDSESFHA RGGGLDIVGK RLSEYAKSCR VPFEFHSAAM SGCEVELENL VVLPGEALAV  180
NFPFVLHHMP DESVSTENHR DRLLRRVKNL SPKVVTLVEQ ESNTNTSPFF QRFVETLSYY  240
SAMFESIDVA LPREDKQRIS AEQHCVARDI VNMIACEGPE RVERHELLGK WRSRFSMAGF  300
APCPLSSSVT NAVRNMLREF NGNYRLEHID GALYLGWKRR ALCTSSAWRC Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-581234936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g01200.6
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437366.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_017437367.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M51e-177SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0L9VF670.0A0A0L9VF67_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S3W70.0A0A0S3S3W7_PHAAN; Uncharacterized protein
STRINGXP_007147638.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-178SCARECROW-like 13
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]