PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g01660.2

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

SBP

Protein Properties

Length: 723aa MW: 80768.2 Da PI: 6.5748

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g01660.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	116.8	1.2e-36	119	194	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCe+d+se+k yhrrh+vC +++a++v+++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn rrr+k Vang03g01660.2 119 RCQVPGCEVDISELKGYHRRHRVCLRCANATTVVLHGEPKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNTRRRRK 194 6************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.3E-28	114	181	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	29.658	117	194	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.79E-33	118	195	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-27	120	194	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0055070	Biological Process	copper ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence Send to blast
LNSIQLGFPF LTLSMEPQQS LPPMDDSEDP SSTWDFSYLL DFNLDEDHTD NSLPFSSLFN 60 DAPEIPNDRV RKRDPRLTCS NFLAGRVPCA CPELDAKLED EGLPGKKRAR TARASSSARC 120 QVPGCEVDIS ELKGYHRRHR VCLRCANATT VVLHGEPKRY CQQCGKFHVL SDFDEGKRSC 180 RRKLERHNTR RRRKPLVESG DCSNLSNEIN DIVVLPDHGE EPVPILVSAP DAQNVNSDSV 240 VSLPVSGETR VNSGNTSNSP SYCDNKSAYT SMCQTGRISF KLYDWNPAEF PRRLRHQIFQ 300 WLASMPVELE GYIRPGCTIL TSFIAMPNIM WINHISMVTD GTSVTKVEVN LQAPRLHYVH 360 PTCFEAGKPM EFVACGSNLL QPKFQLLVSF SGKYLKCEYC VPSPHNWTEE NISCAFDNQL 420 YKIYVPHTEE SLSGPAFIEV ENESGLSNFI PVLIADKETC SEMKILQQKL DSSLLSNQFR 480 SASGGSICSS CETFTLSHTS SDLLVDIAWL LKDTTSENFD RVITASQIQR YCHLLDFLMC 540 NESTVMLEKI LPNLIILTAS MKSNFVINTT SDVDTRQLLN HIHNAQITIF QKHQKNGSII 600 VQPEMEGFRL AQGCSHDNKI SVAINSQGIL SRADAKWGVL KNLTCSDKNE RIPLLKRDII 660 MNVEELPEIY GRGCLGRGLL TPRPAIFVMV SIAVCLGVCV AVLHPGGVTE LAVSVRRCLF 720 NY*

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence Send to blast

LNSIQLGFPF LTLSMEPQQS LPPMDDSEDP SSTWDFSYLL DFNLDEDHTD NSLPFSSLFN  60
DAPEIPNDRV RKRDPRLTCS NFLAGRVPCA CPELDAKLED EGLPGKKRAR TARASSSARC  120
QVPGCEVDIS ELKGYHRRHR VCLRCANATT VVLHGEPKRY CQQCGKFHVL SDFDEGKRSC  180
RRKLERHNTR RRRKPLVESG DCSNLSNEIN DIVVLPDHGE EPVPILVSAP DAQNVNSDSV  240
VSLPVSGETR VNSGNTSNSP SYCDNKSAYT SMCQTGRISF KLYDWNPAEF PRRLRHQIFQ  300
WLASMPVELE GYIRPGCTIL TSFIAMPNIM WINHISMVTD GTSVTKVEVN LQAPRLHYVH  360
PTCFEAGKPM EFVACGSNLL QPKFQLLVSF SGKYLKCEYC VPSPHNWTEE NISCAFDNQL  420
YKIYVPHTEE SLSGPAFIEV ENESGLSNFI PVLIADKETC SEMKILQQKL DSSLLSNQFR  480
SASGGSICSS CETFTLSHTS SDLLVDIAWL LKDTTSENFD RVITASQIQR YCHLLDFLMC  540
NESTVMLEKI LPNLIILTAS MKSNFVINTT SDVDTRQLLN HIHNAQITIF QKHQKNGSII  600
VQPEMEGFRL AQGCSHDNKI SVAINSQGIL SRADAKWGVL KNLTCSDKNE RIPLLKRDII  660
MNVEELPEIY GRGCLGRGLL TPRPAIFVMV SIAVCLGVCV AVLHPGGVTE LAVSVRRCLF  720
NY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul5_A	2e-43	116	200	2	86	squamosa promoter binding protein-like 7
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	180	192	RRKLERHNTRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269\|PubMed:19122104, ECO:0000269\|PubMed:22374396, ECO:0000269\|PubMed:25516599, ECO:0000269\|PubMed:26511915, ECO:0000269\|PubMed:27352843}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00604	PBM	Transfer from AT5G18830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g01660.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017436754.1	0.0	PREDICTED: squamosa promoter-binding-like protein 7
Swissprot	Q8S9G8	0.0	SPL7_ARATH; Squamosa promoter-binding-like protein 7
TrEMBL	A0A0S3S3G1	0.0	A0A0S3S3G1_PHAAN; Uncharacterized protein
STRING	XP_007147848.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.1	0.0	squamosa promoter binding protein-like 7

Publications ? help Back to Top
Zhang H, et al. MicroRNA408 is critical for the HY5-SPL7 gene network that mediates the coordinated response to light and copper. Plant Cell, 2014. 26(12): p. 4933-53 [PMID:25516599] Zhao Y, et al. MicroRNA857 Is Involved in the Regulation of Secondary Growth of Vascular Tissues in Arabidopsis. Plant Physiol., 2015. 169(4): p. 2539-52 [PMID:26511915] Perea-García A, et al. Modulation of copper deficiency responses by diurnal and circadian rhythms in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(1): p. 391-403 [PMID:26516126] Gielen H,Remans T,Vangronsveld J,Cuypers A Toxicity responses of Cu and Cd: the involvement of miRNAs and the transcription factor SPL7. BMC Plant Biol., 2016. 16(1): p. 145 [PMID:27352843] Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014] Araki R, et al. SPL7 locally regulates copper-homeostasis-related genes in Arabidopsis. J. Plant Physiol., 2018. [PMID:29635212]