PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g02210.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 247aa    MW: 27530.1 Da    PI: 9.221
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g02210.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP103.24.4e-32681797112
             TCP   7 rhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssaseceaesssssasnsssgkaaksa 94 
                      hsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++       + +++ e  + s +  ++ +  ++a  ++
  Vang03g02210.2  68 VHSKVMTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLINAASDAISELPSLnnpfpdtPKQPSDEKRPTSGQRGVQPQAFDDADGDT 162
                     6**********************************************************776655522222222333333333322333333333 PP

             TCP  95 a.kskksqksaasalnlak 112
                     +  ++++++s++  l+l+k
  Vang03g02210.2 163 NfLHQSQNQSQN--LSLSK 179
                     323333333333..44444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136926.5660123IPR017887Transcription factor TCP subgroup
PfamPF036341.6E-3269176IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
LLILRTGESY KQADTRRSQK EFGADPRPIC KICCFSLKTK REDLDQRLIP FKVLSVKQHG  60
QTQILSAVHS KVMTSKGLRD RRVRLSVTTA IQFYDLQDRL GYDQPSKAVE WLINAASDAI  120
SELPSLNNPF PDTPKQPSDE KRPTSGQRGV QPQAFDDADG DTNFLHQSQN QSQNLSLSKG  180
TLQSNSPSFL PHLQSKNEHA NCFYQKSNIF GPNSQWAKIL NLLMYEGLWS LFFVGAASCV  240
PSLASA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2370124155Putative transcription factor PCF6
5zkt_B3e-2370124155Putative transcription factor PCF6
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00639PBMTransfer from Lj6g3v1946420Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g02210.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.25e-31TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2