PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g04180.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

CAMTA

Protein Properties

Length: 873aa MW: 98822.4 Da PI: 5.0864

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g04180.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	180.2	2.4e-56	37	151	4	118
CG-1 4 ekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrc 98 ++rwl++ ei++iL n++ +++t+e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+e+n++fqrr+ Vang03g04180.1 37 AQHRWLRPAEICEILRNYQMFQITSEPHNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEDNEHFQRRS 131 49******************************************************************************************* PP CG-1 99 ywlLeeelekivlvhylevk 118 yw+Le ++ +iv+vhylevk Vang03g04180.1 132 YWMLEPDMMHIVFVHYLEVK 151 ***************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	81.432	30	156	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	1.5E-80	33	151	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.1E-50	36	150	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF48403	6.22E-14	378	420	IPR020683	Ankyrin repeat-containing domain
Pfam	PF01833	8.0E-5	515	590	IPR002909	IPT domain
SuperFamily	SSF81296	9.33E-15	515	600	IPR014756	Immunoglobulin E-set
PROSITE profile	PS50297	14.822	686	768	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.22E-14	694	763	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	6.8E-12	698	763	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	6.21E-11	704	767	No hit	No description
PROSITE profile	PS50088	8.87	715	747	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence Send to blast
LSLSSFALIS DSVFAMAEGA AYGLRRPLDI QQLQFEAQHR WLRPAEICEI LRNYQMFQIT 60 SEPHNRPPSG SLFLFDRKIL RYFRKDGHNW RKKKDGKTVK EAHEKLKVGS VDVLHCYYAH 120 GEDNEHFQRR SYWMLEPDMM HIVFVHYLEV KGNKNIVVNT EGDEVPLDSQ KVTSLSTDSI 180 SASSSLMSLR EDADSEDVYQ ASSGLRPLHE SQHMGNGPLP EKIDAGLNSS YHTSPFSGFF 240 FFSILVVSGD HGQSSISGTD YIPVVHGDKF RGNDTPYFDG EKTHGMAPWD TVLQSTAKLH 300 NDPSLASFPS IPPSSMGNVL EQEHTIYGDL LTGKRDLTEE EESSRSLQPS WQIPFEDNSG 360 DMPMSSQNQP FGLHYGSDYG TSLLGYGARN ASSEIAPILY SFNGDPKEQL LQKNYPQEHA 420 DGQSQHTLKS NSANKVPDEE SINYGLTVKR TLLDRDESLK KVDSFSRWVT KELGEVADLN 480 MQSTPGISWS TDECQHVIDD SSLSPSLSQD QLFSINDFSP KWAYAELDIE VLIIGSFLKS 540 QPEVTTCNWS CMFGEVEVPA EVLADGILCC QAPRHKVGRV PFYVTCSNRL ACSEVREFDF 600 REGFARNVDF AEFFGSSTEM RIHLRLEKFL TLKPVNPSNH SFEGDMEKRN IIFKLISLRE 660 EEEYSIKDEP TKELDISQHT VREHLVHRQV KEKLYSWLLH KVTENGKGPN VLDEDGQGVL 720 HLAAFLGYDW AINPIIAAGV NINFRDVNGW TALHWAAFCG RXSSLRFYPS LLSPVIENKL 780 RLKEDDYDFL KEGRKQKEEK IQKALSRVKS MVQYPEARAQ YRRLLNVVED FRQTKGTNEG 840 LTSSEGTFDG VEDLIDIDML LDDDNFIPIA FN*

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence Send to blast

LSLSSFALIS DSVFAMAEGA AYGLRRPLDI QQLQFEAQHR WLRPAEICEI LRNYQMFQIT  60
SEPHNRPPSG SLFLFDRKIL RYFRKDGHNW RKKKDGKTVK EAHEKLKVGS VDVLHCYYAH  120
GEDNEHFQRR SYWMLEPDMM HIVFVHYLEV KGNKNIVVNT EGDEVPLDSQ KVTSLSTDSI  180
SASSSLMSLR EDADSEDVYQ ASSGLRPLHE SQHMGNGPLP EKIDAGLNSS YHTSPFSGFF  240
FFSILVVSGD HGQSSISGTD YIPVVHGDKF RGNDTPYFDG EKTHGMAPWD TVLQSTAKLH  300
NDPSLASFPS IPPSSMGNVL EQEHTIYGDL LTGKRDLTEE EESSRSLQPS WQIPFEDNSG  360
DMPMSSQNQP FGLHYGSDYG TSLLGYGARN ASSEIAPILY SFNGDPKEQL LQKNYPQEHA  420
DGQSQHTLKS NSANKVPDEE SINYGLTVKR TLLDRDESLK KVDSFSRWVT KELGEVADLN  480
MQSTPGISWS TDECQHVIDD SSLSPSLSQD QLFSINDFSP KWAYAELDIE VLIIGSFLKS  540
QPEVTTCNWS CMFGEVEVPA EVLADGILCC QAPRHKVGRV PFYVTCSNRL ACSEVREFDF  600
REGFARNVDF AEFFGSSTEM RIHLRLEKFL TLKPVNPSNH SFEGDMEKRN IIFKLISLRE  660
EEEYSIKDEP TKELDISQHT VREHLVHRQV KEKLYSWLLH KVTENGKGPN VLDEDGQGVL  720
HLAAFLGYDW AINPIIAAGV NINFRDVNGW TALHWAAFCG RXSSLRFYPS LLSPVIENKL  780
RLKEDDYDFL KEGRKQKEEK IQKALSRVKS MVQYPEARAQ YRRLLNVVED FRQTKGTNEG  840
LTSSEGTFDG VEDLIDIDML LDDDNFIPIA FN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:23581962, ECO:0000269\|PubMed:25039701, ECO:0000269\|PubMed:25627216, ECO:0000305\|PubMed:11925432}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g04180.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:25627216}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017436307.1	0.0	PREDICTED: calmodulin-binding transcription activator 2-like
Swissprot	Q6NPP4	0.0	CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBL	A0A0S3S216	0.0	A0A0S3S216_PHAAN; Uncharacterized protein
STRING	GLYMA15G05900.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7406	26	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64220.2	0.0	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]