PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g04420.3
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 379aa    MW: 43722.5 Da    PI: 5.9882
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g04420.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.16.3e-25959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    k+i+n   rqvtfskRr+g++KK +ELS+LCdae+a+i+fsst kl+ey+s
  Vang03g04420.3  9 KKIDNINARQVTFSKRRKGLFKKTQELSTLCDAEIALIVFSSTSKLFEYAS 59
                    689**********************************************86 PP
2K-box35.25.2e-13981692398
           K-box  23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq.kkekelqeenkaLrkkl 98 
                      Lkk  +++q +     G+dL+ L+++eLq+Le+ L+k   +i + K+e ++++i+ l+ kke el een++L++++
  Vang03g04420.3  98 HLKKSHDSIQLN-----GQDLQGLTIQELQKLEELLQKRWITISKIKEEKMTQEINSLKtKKEAELTEENQKLKQNF 169
                     556666666555.....*****************************************956799**********987 PP
3K-box41.17.5e-153163772283
           K-box  22 akLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 
                     a L+k++e   re R+l Ge+Le L+lkeLq+Le++L++sl+++ + K +++l++i  l +k
  Vang03g04420.3 316 ASLNKQLEDRSREMRQLNGEELEGLNLKELQKLEERLDSSLNSVYKAKVQIFLAEITILSQK 377
                     67899999999*********************************************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.259161IPR002100Transcription factor, MADS-box
SMARTSM004329.3E-36160IPR002100Transcription factor, MADS-box
CDDcd002654.54E-36278No hitNo description
PRINTSPR004044.3E-24323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-28376IPR002100Transcription factor, MADS-box
PfamPF003193.5E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004044.3E-243859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.02273175IPR002487Transcription factor, K-box
PfamPF014865.8E-9107169IPR002487Transcription factor, K-box
PROSITE profilePS512979.643308378IPR002487Transcription factor, K-box
PfamPF014862.9E-12316377IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MARKKIPIKK IDNINARQVT FSKRRKGLFK KTQELSTLCD AEIALIVFSS TSKLFEYASS  60
SMQQIIERRN QHSGVQGSDI ASTGKQCCRF ELCNSHCHLK KSHDSIQLNG QDLQGLTIQE  120
LQKLEELLQK RWITISKIKE EKMTQEINSL KTKKEAELTE ENQKLKQNFY EQKLVREQCY  180
ESITSSSSDF PPDNGSSDTS LKLGSNRARF SGLLDFDENG EEEDTDQEDR GRNCEAGDIL  240
KEKEWPFEES TMQKITERYI LCSEWNLDKL DQSYPTEQDF SRYPLIEYML ITFHVSKCHF  300
FSSVHLICVV IVQGNASLNK QLEDRSREMR QLNGEELEGL NLKELQKLEE RLDSSLNSVY  360
KAKVQIFLAE ITILSQKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-19181185MEF2C
5f28_B7e-19181185MEF2C
5f28_C7e-19181185MEF2C
5f28_D7e-19181185MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g04420.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-96AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435318.11e-122PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_017435319.11e-122PREDICTED: MADS-box protein JOINTLESS-like isoform X1
RefseqXP_017435320.11e-122PREDICTED: MADS-box protein JOINTLESS-like isoform X1
SwissprotQ9FUY68e-45JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A4D6KH091e-174A0A4D6KH09_VIGUN; MADS-box transcription factor
STRINGXP_007148367.13e-88(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-30MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]