PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g04600.6
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MIKC_MADS
Protein Properties Length: 309aa    MW: 35088.2 Da    PI: 9.7315
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g04600.6genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.12e-2752101251
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                     ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s
  Vang03g04600.6  52 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 101
                     8***********************************************86 PP
2K-box60.37.9e-21123223998


   


	

		Protein Features
		? help Back to Top
	

	
3D Structure
	

		Database
		Entry ID
		E-value
		Start
		End
		InterPro ID
		Description
	


	
SMARTSM004321.2E-4043102IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.08543103IPR002100Transcription factor, MADS-box
CDDcd002653.10E-4444119No hitNo description
SuperFamilySSF554551.15E-3244132IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-284565IPR002100Transcription factor, MADS-box
PROSITE patternPS0035004599IPR002100Transcription factor, MADS-box
PfamPF003196.6E-255299IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-286580IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-2880101IPR002100Transcription factor, MADS-box
PfamPF014863.0E-16125223IPR002487Transcription factor, K-box
PROSITE profilePS5129711.339128230IPR002487Transcription factor, K-box

	 
  
 


	

		Gene Ontology ? help Back to Top
	

	

		GO Term
		GO Category
		GO Description
	


	
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity

	  
 


	

		Sequence ? help Back to Top
	

		

		Protein Sequence    Length: 309		aa    
		Download sequence    Send
		to blast
	

	

		
MYNSIASCNS PRIRNIHLRK SCPSSPSLLC FSLITTHSHN FQMGRGKIAI RRIDNSTSRQ  60
VTFSKRRNGL LKKARELSIL CDAEVGLMVF SSTGKLYDYA STSMKSVFER YNKLKEEHHH  120
LMNPASEEKF WQTEAANLRT QLQYLQECHS ISIFVSFGNS RQLMGEELTG LGIKELQNLE  180
NQLEMSLKGV RMKKGNLIHQ DNVELYQKMD QIQKENAELQ KKVFGSRSTG EENVASSPSY  240
MVRNEYELRP PISLQLSQPQ TQYSEPSAKI AAALAKNCSV NGDLSFCDKK QLLQLLPRMV  300
RLSTSWVL*

	




   


	

		3D Structure ? help Back to Top
	

	
Structure
	
	
	
	

		PDB ID
		Evalue
		Query Start
		Query End
		Hit Start
		Hit End
		Description
	


	
5f28_A6e-2243123181MEF2C
5f28_B6e-2243123181MEF2C
5f28_C6e-2243123181MEF2C
5f28_D6e-2243123181MEF2C
	
Search in ModeBase

	     

  
    
  



	
		

	

	Functional Description  ? help
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		Source
		Description
	

	
UniProtProbable transcription factor.
	
	
	
	






 


        

                Cis-element
                ? help Back to Top
        

        
SourceLink
PlantRegMapVang03g04600.6




	
	        

        

        Regulation -- PlantRegMap  ? help
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                Source
                Upstream Regulator
		Target Gene
        

        
PlantRegMapRetrieve-
	

	        


	










 
	

	

		Annotation --
		Nucleotide ? help
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		Source
		Hit ID
		E-value
		Description
	

	
GenBankBT0968101e-135BT096810.1 Soybean clone JCVI-FLGm-25F18 unknown mRNA.

	  
	

	

		Annotation -- Protein
		? help Back to Top
	

	

		Source
		Hit ID
		E-value
		Description
	

	
RefseqXP_017436232.11e-152PREDICTED: MADS-box transcription factor 23-like isoform X2 
SwissprotQ6EP497e-80MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A0S3S2761e-151A0A0S3S276_PHAAN; Uncharacterized protein
STRINGGLYMA13G32810.11e-130(Glycine max)

   
  
	

        

                Best hit in Arabidopsis thaliana ? help
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                Hit ID
                E-value
                Description
        

	
AT4G37940.13e-79AGAMOUS-like 21



   
 


	

		Publications
		? help Back to Top
	

	

	
	
    
	
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
    3.