PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06050.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family SBP
Protein Properties Length: 149aa    MW: 17262.1 Da    PI: 11.7936
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP48.42.6e-151141444878
                     SEEETTT--SS--S-STTTT-------S--- CS
             SBP  48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     rfhelsefDe+krsCrrrLa+hnerrrk+++
  Vang03g06050.1 114 RFHELSEFDESKRSCRRRLAGHNERRRKNAS 144
                     9***************************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.107.4E-5112129IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.94E-12114145IPR004333Transcription factor, SBP-box
PROSITE profilePS5114111.579114142IPR004333Transcription factor, SBP-box
PfamPF031103.9E-9114141IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MMIMRRRKRR REVSTERTVG RRGWSLTREA PKLEAQCHLH VKLMVVMLIS VMPSPTTGVT  60
RFVSTMPRLL QFSLQSSING FANNAVAICG FFRTAYVYTL CPFQPTLARD KTLRFHELSE  120
FDESKRSCRR RLAGHNERRR KNASEYGH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310MRRRKRRR
2410RRRKRRR
3411RRRKRRRE
4610RKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g06050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-142AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.23e-13squamosa promoter binding protein-like 4