PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06140.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 110aa    MW: 12006.5 Da    PI: 10.5797
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06140.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-201464256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+eeAa a++ a+++l+g+
  Vang03g06140.1 14 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 64
                    69*******.**********883....5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.23E-281473No hitNo description
PfamPF008471.1E-131463IPR001471AP2/ERF domain
PROSITE profilePS5103222.7211471IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-231472IPR016177DNA-binding domain
SMARTSM003804.1E-351477IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-321472IPR001471AP2/ERF domain
PRINTSPR003672.7E-111526IPR001471AP2/ERF domain
PRINTSPR003672.7E-113753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
MMASSSSSGS REGHYRGVRK RPWGRYAAEI RDPWKKTRVW LGTFDTPEEA ALAYDGAARS  60
LRGAKAKTNF PPSPALCLDL NAPSSDHRWP NEMIGSKQGD GNARRGKVC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-221471563ATERF1
3gcc_A2e-221471563ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00645PBMTransfer from LOC_Os05g41760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g06140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-152AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435349.14e-61PREDICTED: ethylene-responsive transcription factor 12 isoform X1
RefseqXP_017435350.14e-61PREDICTED: ethylene-responsive transcription factor 12 isoform X2
SwissprotQ94ID65e-39ERF81_ARATH; Ethylene-responsive transcription factor 12
TrEMBLA0A0S3S2P91e-59A0A0S3S2P9_PHAAN; Uncharacterized protein
STRINGGLYMA13G31010.14e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.14e-40ERF domain protein 12