PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06550.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 371aa    MW: 40617.2 Da    PI: 6.1987
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06550.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20123173255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd s+   + +r++lg+f taeeAa a+++a+++++g
  Vang03g06550.1 123 QYRGVRRRP-WGKYAAEIRDSSK---KgARVWLGTFETAEEAALAYDKAALRIRG 173
                     7********.**********543...34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.13E-30122181No hitNo description
Gene3DG3DSA:3.30.730.101.2E-31123182IPR001471AP2/ERF domain
PROSITE profilePS5103224.052123181IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-23123182IPR016177DNA-binding domain
PfamPF008475.4E-14123173IPR001471AP2/ERF domain
SMARTSM003801.9E-37123187IPR001471AP2/ERF domain
PRINTSPR003675.5E-11124135IPR001471AP2/ERF domain
PRINTSPR003675.5E-11147163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDIHSNHGAT SEGILENVWA KIMSSDKADG RKGDAAESCN SWEELPHLDG REGSMEILQR  60
LPSLGRWISM GADFWEEVLD GIVLPNTSNT EYCSHNNIEI GSAGECNNKV EGGVRMEKEV  120
RKQYRGVRRR PWGKYAAEIR DSSKKGARVW LGTFETAEEA ALAYDKAALR IRGPKAYLNF  180
PLERVAKALG CDKKESLIKS RKREVFDDDT MNEEPARKKL ECMVENELGG AVVSHGGLFG  240
GLEGAEPYSG AVACGVPNLG GVLPPGSAAN SSVVFFGDVS GGLEAQLRLV ESLVRVECVG  300
ESIGLVENLV YDHVLRVVLV EGESLFLFPL RLSGFGREEK LAKVCQVVLD LAYIYGINGK  360
RRRHRIFCGR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-28122182161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g06550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434827.11e-167PREDICTED: ethylene-responsive transcription factor ERF091
TrEMBLA0A0L9VF911e-166A0A0L9VF91_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S2T21e-166A0A0S3S2T2_PHAAN; Uncharacterized protein
STRINGXP_007148087.11e-135(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95473142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-33ERF family protein