PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g06800.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Trihelix
Protein Properties Length: 337aa    MW: 38336.4 Da    PI: 5.1768
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g06800.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix476.9e-1521112187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     +W+++   +L++a  ++  +l+rg+l++++W++v++++     + ++ +r+ +qCk++++ ++k+yk +k++ ++ + + ss++p++++l+a
  Vang03g06800.1  21 CWSEEASSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKIEKARVSSSNGTLSSSWPFYERLDA 112
                     7****************************************99999****************************99999999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.4E-2519113No hitNo description
Gene3DG3DSA:1.10.601.107.1E-4187290No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MPDFNDSIAP PSRPVPVRED CWSEEASSTL VDAWGRRYLE LNRGNLRQKD WQDVADAVNA  60
LHGHTKKTHR TDVQCKNRID TIKKKYKIEK ARVSSSNGTL SSSWPFYERL DALIGPNFNA  120
KKPPSSSPSP SPPVALPLLP HRKNPSSSPA IAVTPTAVAL PQKRSAAAAA MDEGYFRRNY  180
SAVAAAAAAA EADEDEEEEE EEEADDVEEE EDEDEGRGSE VEEGEKEREG MRRLAKAIER  240
FGEVYERVEG QKLRQMVDLE KQRMQFAKDL EVQRMQMFMD TQVQLERIKR GKRSGSNGTT  300
HYVLEERRRT VSYWFGSRNI HKNQDSEENG KDSFDYR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g06800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022642267.10.0trihelix transcription factor ASIL2 isoform X2
RefseqXP_022642268.10.0trihelix transcription factor ASIL2 isoform X2
TrEMBLA0A3Q0FES80.0A0A3Q0FES8_VIGRR; trihelix transcription factor ASIL2 isoform X2
STRINGXP_007148047.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-41sequence-specific DNA binding transcription factors