PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g07860.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 257aa    MW: 28499.5 Da    PI: 8.9416
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g07860.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC137.24.6e-4384183297
           NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     +ksfw++q   ie++td++ +h++Pl+r+kki+k+d dvk +saeaPv+++kacelfi+elt+++w +ae+n+r+t+kksd+a+a++rtd+fdfl
  Vang03g07860.1  84 VKSFWAQQlkeIEESTDLRiQHRIPLSRVKKIMKSDADVKLVSAEAPVVFAKACELFIMELTMKAWANAEDNNRSTIKKSDVASAIARTDVFDFL 178
                     799***9998899*****99*************************************************************************** PP

           NF-YC  93 vdivp 97 
                      di p
  Vang03g07860.1 179 EDIAP 183
                     **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.4E-2756178IPR009072Histone-fold
PfamPF008081.7E-18106169IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.106.3E-32108183IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MKINLNSIRA ASMEQNQHGQ PGRGIGSAPA QEAHNKNQYQ SKPTNPPIQT VGPSVPSPYP  60
GENHYALRSM DRQQQQQDQL EEKVKSFWAQ QLKEIEESTD LRIQHRIPLS RVKKIMKSDA  120
DVKLVSAEAP VVFAKACELF IMELTMKAWA NAEDNNRSTI KKSDVASAIA RTDVFDFLED  180
IAPIPRVHKN TMMHPLLPGN APTPTENVPH MPPPQHVASP PPPYVAAEIP HALQIYPLVP  240
SSTVPPQSAK PFSYFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-3891183394NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g07860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017412816.11e-151PREDICTED: nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0L9TTU51e-150A0A0L9TTU5_PHAAN; Uncharacterized protein
STRINGXP_007147757.12e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2069625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.22e-43nuclear factor Y, subunit C2