PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g08430.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 382aa    MW: 41838.4 Da    PI: 5.1607
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g08430.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31213271259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Vang03g08430.1 213 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 271
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925207273IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.7E-31207273IPR003657WRKY domain
SuperFamilySSF1182902.48E-26210273IPR003657WRKY domain
SMARTSM007741.4E-37212272IPR003657WRKY domain
PfamPF031067.5E-26214271IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
SSSSSSSDPI TFSSVLQDPR GLTNFGDPFS TMRDPFLQEL DMPSASSYFT GGLEEAAASF  60
GASAVSTSTN TNTSTTVFAA HKILEEHDMR RPCKNIFSNM IQISPNAKLP VSPYDSTTAV  120
APSPRAIKPP AVVSPNMVTA NSSKDCLVDT TGVQISSPRN PGLKRRCGGV KFYESGYGEV  180
CTVERKKNQA KKVVCIPAPA AANSRQTGEV VPSDLWAWRK YGQKPIKGSP YPRGYYRCSS  240
SKGCSARKQV ERSRTDPNML VITYTSEHNH PWPTQRNALA ENMEDIEKQF EMDEGEFSDG  300
LPYKPCLMDQ SNNQSEDFFA ELGEIEADPL DILFTQGFGA ADDQREESKA LDPFHLFDWS  360
GDNNTSTNTG SFEEPNAKRR L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25187274280Disease resistance protein RRS1
5w3x_D2e-25187274280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g08430.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020230817.10.0probable WRKY transcription factor 14
SwissprotQ9SA803e-81WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A151SBB00.0A0A151SBB0_CAJCA; Putative WRKY transcription factor 14
STRINGXP_007147420.11e-163(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54303454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.15e-81WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]