PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g09030.1
Common NameLR48_Vigan09g166000
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 231aa    MW: 26659.8 Da    PI: 8.2941
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g09030.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-182375456
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    + +f++ q++ Le++Fe ++ +  +++ e A++lgL+ rqV +WFqN+Ra++k
  Vang03g09030.1 23 KKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWK 75
                    457*************************************************9 PP
2HD-ZIP_I/II114.75.8e-3722113293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +k+r+s+ qvk+LE++Fe++++Lep +K e+areLglqprqva+WFqn+RAR+k+kql +dy++L+++y++l ++ ++L+ke +++ ++l++
  Vang03g09030.1  22 NKKRFSDGQVKSLESMFETDSRLEPAKKLEVARELGLQPRQVAIWFQNKRARWKLKQLQRDYTTLRANYKTLDSRFDALNKEYQSMLTQLQD 113
                     69***********************************************************************************9999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-18675IPR009057Homeodomain-like
SuperFamilySSF466891.38E-17778IPR009057Homeodomain-like
SMARTSM003899.8E-161581IPR001356Homeobox domain
CDDcd000862.54E-131678No hitNo description
PROSITE profilePS5007116.7461777IPR001356Homeobox domain
PfamPF000462.8E-152375IPR001356Homeobox domain
PRINTSPR000311.3E-54857IPR000047Helix-turn-helix motif
PROSITE patternPS0002705275IPR017970Homeobox, conserved site
PRINTSPR000311.3E-55773IPR000047Helix-turn-helix motif
PfamPF021835.0E-1177119IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSDISEYSHS SNAGTRKKRS INKKRFSDGQ VKSLESMFET DSRLEPAKKL EVARELGLQP  60
RQVAIWFQNK RARWKLKQLQ RDYTTLRANY KTLDSRFDAL NKEYQSMLTQ LQDLKNRLQK  120
PLEQTESCST RYKAANSMES EAGNGETVKR EQEIKRPCWT AGRSEGIVRS VISDCDSSIK  180
AKQYFGVEDE ASLLNFVENT DGSLTTPQHW GLLESDDIMG CDYQWWDFWS *
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g09030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017435922.11e-172PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0L9VD681e-171A0A0L9VD68_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S4P91e-170A0A0S3S4P9_PHAAN; Uncharacterized protein
STRINGXP_007147343.11e-137(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56353452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-50homeobox 12
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]