PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g10190.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family Whirly
Protein Properties Length: 273aa    MW: 30559.6 Da    PI: 8.4911
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g10190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly1186.3e-3773153282
          Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaa 82 
                     vyk+kaa+++ + +ptf++ldsg+++++r+G+++++++ +++erkydWek+q+falsatev++l++++s++s+effhdp++
  Vang03g10190.1  73 VYKGKAAFSLSPCLPTFTKLDSGTVVVDRRGSIMMTFMHSIGERKYDWEKRQRFALSATEVGSLINMGSQDSSEFFHDPSM 153
                     9******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.105.6E-4061161IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544479.42E-3164154IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.3E-3473162IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MFKLSRVLHL TSTSRHRLLE VLSSRNVEVG DSLWDRRDFT HSAGISTSTN NYAAKGIAYT  60
RYASDRIFAP YTVYKGKAAF SLSPCLPTFT KLDSGTVVVD RRGSIMMTFM HSIGERKYDW  120
EKRQRFALSA TEVGSLINMG SQDSSEFFHD PSMLSRCCQQ PVKHQRLLQC SCHSCRVCCN  180
EDSLQCQDWC NLGRRSRLVN PTSDEGGLKP FRIEVLDESS PCGLGPSSTF ALPHIMGWDQ  240
ITNPQSRGTE SRGTVGIQRK GGSQVLDLEW EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A1e-50642428167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B1e-50642428167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C1e-50642428167Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D1e-50642428167Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g10190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0948851e-109BT094885.1 Soybean clone JCVI-FLGm-6I20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017437558.11e-134PREDICTED: single-stranded DNA-bindig protein WHY2, mitochondrial
TrEMBLA0A0S3S5071e-133A0A0S3S507_PHAAN; Uncharacterized protein
STRINGXP_007147230.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-53WHIRLY 2