PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g10230.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 234aa    MW: 26156.5 Da    PI: 8.6664
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g10230.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-172370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv  ++++G g+W++ ++  g+ R++k+c++rw +yl
   Vang03g10230.1 23 KGPWTAEEDHILVSHIQRYGHGNWRALPKQAGLLRCGKSCRLRWINYL 70
                     79******************************99************97 PP
2Myb_DNA-binding53.74.8e-1776121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++++eE++ ++++++ lG++ W++Ia  ++ gRt++++k++w+++l
   Vang03g10230.1  76 RGKFSKEEEDTILKLHEILGNR-WSAIATSLP-GRTDNEIKNFWHTHL 121
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-251473IPR009057Homeodomain-like
PROSITE profilePS5129415.1851870IPR017930Myb domain
SuperFamilySSF466898.2E-3119117IPR009057Homeodomain-like
SMARTSM007172.3E-122272IPR001005SANT/Myb domain
PfamPF002492.2E-152370IPR001005SANT/Myb domain
CDDcd001678.76E-102570No hitNo description
PROSITE profilePS5129426.28371125IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2674125IPR009057Homeodomain-like
SMARTSM007171.3E-1675123IPR001005SANT/Myb domain
PfamPF002496.8E-1676121IPR001005SANT/Myb domain
CDDcd001676.67E-1278121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
LCCAVKQAVT MKTPCCERMG MKKGPWTAEE DHILVSHIQR YGHGNWRALP KQAGLLRCGK  60
SCRLRWINYL RPDIKRGKFS KEEEDTILKL HEILGNRWSA IATSLPGRTD NEIKNFWHTH  120
LKKRIQKSGV HINGNASSHI LQEAQANSSS SSGAVSSAYG NVMLDNYGLP SRKNPINPPT  180
VGTGFYGAVS SDTFGETEDS HDSCQLSEEM EFWYNIFIKS GQTSRDNENL GHY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-272112525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g10230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014491522.11e-151transcription factor MYB4
RefseqXP_014491523.11e-151transcription factor MYB4
RefseqXP_022633556.11e-151transcription factor MYB4
RefseqXP_022633557.11e-151transcription factor MYB4
RefseqXP_022633558.11e-151transcription factor MYB4
TrEMBLA0A0S3S5421e-167A0A0S3S542_PHAAN; Uncharacterized protein
STRINGXP_007147213.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.19e-69myb domain protein 15