PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g12440.2

Common Name

LR48_Vigan09g135900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

M-type_MADS

Protein Properties

Length: 165aa MW: 19123.9 Da PI: 6.9334

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g12440.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	26.2	1e-08	1	24	20	43
HHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 20 ilKKAeELSvLCdaevaviifsst 43 ++KK +E+S+LC++e++ ii+s++ Vang03g12440.2 1 LIKKMNEISTLCGIEACAIIYSPN 24 78********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	1.14E-12	1	67	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.9E-7	1	25	IPR002100	Transcription factor, MADS-box
CDD	cd00266	7.00E-19	1	58	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
LIKKMNEIST LCGIEACAII YSPNDPQPEV WPSEPEVQRV LSKFMEMSEQ KQCRKMLNQE 60 SLLKQIIIKG QQQLTRQRND NRKKEMTHLM FQYLNVGRVY DNPSLIDLND LSWLIDQNLN 120 EIKKKMTMIQ IQEGAPVTEN GGERGHMHHA QGPENRTDTI QNQY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g12440.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434674.1	1e-117	PREDICTED: agamous-like MADS-box protein AGL80
TrEMBL	A0A0L9VCA4	1e-116	A0A0L9VCA4_PHAAN; Uncharacterized protein
STRING	XP_007146871.1	1e-100	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48670.1	4e-31	AGAMOUS-like 80

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]