PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g12450.1
Common NameLR48_Vigan09g136100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26515.3 Da    PI: 8.3131
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g12450.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF48.21.4e-151051243
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +i  +s+r+ tf kR+ng++KK  E+S+LC+++++ ii+ ++
  Vang03g12450.1 10 FITKTSKRKATFKKRKNGLIKKIGEISILCGIQACAIIYTPD 51
                    68899**********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-16161IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.596149IPR002100Transcription factor, MADS-box
CDDcd002661.09E-26284No hitNo description
PRINTSPR004049.8E-8323IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-21396IPR002100Transcription factor, MADS-box
PfamPF003193.2E-151051IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-82338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MARKKVDLTF ITKTSKRKAT FKKRKNGLIK KIGEISILCG IQACAIIYTP DEPEQPEVWP  60
SEEGVESAIT RFRSVSELEQ SKKMFCQESF LRQRIVKVQE QLKKVRNENR KKEINHLISQ  120
YITVGNNLET ANIIDLNDIS FLADQCLEDI TKKIAARKAQ MGTQVPENNG GETVTRHGEQ  180
ARVNHVQVQG PYTDVDAMQN LNWSADIINA AAPNEMLSLD DVNVQSGWLN QYIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVDLTFITKTSKRKATFKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g12450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434676.11e-175PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0L9VCQ51e-174A0A0L9VCQ5_PHAAN; Uncharacterized protein
STRINGXP_007146875.11e-152(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-42AGAMOUS-like 80
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]