PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g12460.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 472aa    MW: 54074.7 Da    PI: 8.668
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g12460.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.44.5e-141045742
                    HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                    + r+ +++kR++ +lKK eE+S+LC++e++ i++++
  Vang03g12460.1 10 IDRKASYIKRKKSLLKKTEEISTLCGVEACTIVYGP 45
                    57999*****************************97 PP
2SRF-TF42.21.1e-13321361242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
          SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 
                     +i n+  r  ++ +R++ +lKK eELS+LC++e++ i++s+
  Vang03g12460.1 321 FIANDCARRASYRRRKKSMLKKIEELSTLCGVEACAIVYSP 361
                     799*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-4155IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.876956IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.02E-141076IPR002100Transcription factor, MADS-box
PfamPF003195.5E-111145IPR002100Transcription factor, MADS-box
CDDcd002666.28E-141277No hitNo description
PROSITE profilePS5006613.105312360IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-13312371IPR002100Transcription factor, MADS-box
CDDcd002665.77E-20315387No hitNo description
SuperFamilySSF554555.1E-18315393IPR002100Transcription factor, MADS-box
PfamPF003197.2E-13321361IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAEPSRSCRI DRKASYIKRK KSLLKKTEEI STLCGVEACT IVYGPYAPVP DVWTSNAGVE  60
NVVEKFRNTC EHNKKMATQE SFLSERIAKG REKMKKHVRS NQEKEMTMFM FQCLKNGRVE  120
LHNNMTPDDL NVLSSVIESK LRDINKKMET LNVSEMPPNQ TQMAPPALPV ALPVAAPVAL  180
PVAAPVAAPE NIITPPNHGD GTYMNADDPL QSQWFMDLLN DNGDEETIKR ICKQVFSLLF  240
LLFLLTTMTW KRLKLSLKKL LKENKEKEIV HVSEEDGNIT IADLNVLSSV IEKNLRNINK  300
RLETLNANEM FVSWRKVKLA FIANDCARRA SYRRRKKSML KKIEELSTLC GVEACAIVYS  360
PFDQEAQIWP SESGVQNVVE KFRTMPEWKK HKMGNQESVM EKSIMKGKRK IAKLEEENKE  420
MEITMFMFQC LDTTRVQHQQ NMTLEDLNLL SSVIEQKLND VSRRLDLTDV TE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g12460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434678.11e-136PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0L9VCB01e-135A0A0L9VCB0_PHAAN; Uncharacterized protein
STRINGXP_007146878.11e-119(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1823856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-35AGAMOUS-like 80