PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g12490.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 193aa    MW: 22267.7 Da    PI: 9.9931
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g12490.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF47.81.8e-151151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i +  +r+ tf kR+ng++KK +E+ vLC+++++ +++s++
  Vang03g12490.1 11 ITDPAKRKATFKKRKNGLMKKISEITVLCGIDACAVVYSPD 51
                    677889*********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.465149IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-18161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-23296IPR002100Transcription factor, MADS-box
CDDcd002664.18E-27284No hitNo description
PRINTSPR004048.4E-9323IPR002100Transcription factor, MADS-box
PfamPF003193.8E-171151IPR002100Transcription factor, MADS-box
PRINTSPR004048.4E-92338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MTRAKIELAY ITDPAKRKAT FKKRKNGLMK KISEITVLCG IDACAVVYSP DLPNKPEVWP  60
SESEARSVIS KFNGVSEAEK RKKMFCQESF IRQRIDKGKE QLKKLKNENR KREINLLMCE  120
YLTHGGNNLD SNNMSYLKDF SFFTDQNLDE IRNKITMLQT QEETPETMDQ GEQAQVHVPK  180
TNFSRKIIKK LN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
180105RKKMFCQESFIRQRIDKGKEQLKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g12490.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436000.11e-142PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0S3S5Y51e-132A0A0S3S5Y5_PHAAN; Uncharacterized protein (Fragment)
STRINGXP_007146876.11e-115(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4044422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-37M-type_MADS family protein