PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g12490.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 166aa    MW: 19148.9 Da    PI: 8.6222
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g12490.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.19.6e-081242043
                    HHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF 20 ilKKAeELSvLCdaevaviifsst 43
                    ++KK +E+ vLC+++++ +++s++
  Vang03g12490.2  1 LMKKISEITVLCGIDACAVVYSPD 24
                    8*********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.83E-11169IPR002100Transcription factor, MADS-box
PfamPF003191.6E-6124IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
LMKKISEITV LCGIDACAVV YSPDLPNKPE VWPSESEARS VISKFNGVSE AEKRKKMFCQ  60
ESFIRQRIDK GKEQLKKLKN ENRKREINLL MCEYLTHGGN NLDSNNMSYL KDFSFFTDQN  120
LDEIRNKITM LQTQEETPET MDQGEQAQVH VPKTNFSRKI IKKLN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15378RKKMFCQESFIRQRIDKGKEQLKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g12490.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017436000.11e-121PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A0S3S5Y51e-110A0A0S3S5Y5_PHAAN; Uncharacterized protein (Fragment)
STRINGXP_007146876.12e-94(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65300.15e-28AGAMOUS-like 38