PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g12500.2
Common NameLR48_Vigan09g136500
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family M-type_MADS
Protein Properties Length: 235aa    MW: 26882.2 Da    PI: 8.4866
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g12500.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.86e-181053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +ien+s r++t  kR++g+lKK eELS+LC+++++ i+++++++
  Vang03g12500.2 10 FIENDSARKTTCKKRKKGMLKKIEELSTLCGIDACAIVYGPDDH 53
                    8****************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.5E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.867149IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-23295IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.6E-171052IPR002100Transcription factor, MADS-box
PRINTSPR004044.5E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MTRRKVKLAF IENDSARKTT CKKRKKGMLK KIEELSTLCG IDACAIVYGP DDHESEVWPS  60
HCEVQKVVGR FRNMPAVEKI KKMVNQESFI GQRIQKGNQQ IMKLMKENAE KEFTLFMFQC  120
LTEGRVLPDE NNMTLADLNV LSSVIEQNLK DIDKRLQTLN VNQIQPTQQP EMQTSVFQSQ  180
LKTTSYQPHL QMALMSSGHG LDMDVNPMQR LLFMNLFNGN RDETIMPPFG DPNL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRKVKLAFIENDSARKTTCKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g12500.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017434679.11e-155PREDICTED: agamous-like MADS-box protein AGL80
SwissprotQ9FJK34e-42AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A0L9VCB31e-174A0A0L9VCB3_PHAAN; Uncharacterized protein
STRINGXP_007146879.11e-146(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-44AGAMOUS-like 80
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]