PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang03g14410.2

Common Name

LR48_Vigan09g095300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NF-YB

Protein Properties

Length: 175aa MW: 19229.9 Da PI: 4.8839

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang03g14410.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	102.6	2.9e-32	1	89	8	96
NF-YB 8 lPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 +Pi+nv++im+k lP+ ak+s+ ake++q ++++i+ vt +a +kcq e rk +n+ddllwa+ ++Gf++y+ pl+++l++ r++eg+ Vang03g14410.2 1 MPITNVTKIMRKFLPNTAKVSDGAKEMIQLSATNYITHVTRKAKEKCQSEYRKIMNADDLLWAIENVGFDEYIGPLSTFLQRCRHFEGA 89 8*************************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	7.05E-23	1	90	IPR009072	Histone-fold
Pfam	PF00808	2.0E-16	1	64	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.7E-28	1	90	IPR009072	Histone-fold
PRINTS	PR00615	1.9E-5	28	46	No hit	No description
PRINTS	PR00615	1.9E-5	47	65	No hit	No description
PRINTS	PR00615	1.9E-5	66	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MPITNVTKIM RKFLPNTAKV SDGAKEMIQL SATNYITHVT RKAKEKCQSE YRKIMNADDL 60 LWAIENVGFD EYIGPLSTFL QRCRHFEGAS ANGPAFGPTF GPDLNPLEMP HPPLPPPPPP 120 PPPPVVCSSG LDFSMQQNTI FDPNDVSGYL DGVGCSNNAF INFDPFSLFQ QDQL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_A	2e-26	1	84	13	96	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang03g14410.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017434602.1	1e-128	PREDICTED: nuclear transcription factor Y subunit B-1-like
TrEMBL	A0A0L9VCA8	1e-126	A0A0L9VCA8_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3S6L3	1e-126	A0A0S3S6L3_PHAAN; Uncharacterized protein
STRING	XP_007146648.1	1e-84	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21970.1	2e-29	NF-YB family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]