PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang03g15530.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 159aa    MW: 18079.6 Da    PI: 10.1047
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang03g15530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.91.2e-134584249
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaa 49
                    +y+GVr+++ +g+++A Irdp+    r  r++lg+f+t    aka+++a
  Vang03g15530.1 45 HYRGVRQRP-WGKFAAKIRDPK----RgSRVWLGTFDT----AKAYDRA 84
                    8********.**********83....46**********....5555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.68E-274498No hitNo description
Gene3DG3DSA:3.30.730.104.3E-264499IPR001471AP2/ERF domain
SMARTSM003801.5E-2945104IPR001471AP2/ERF domain
PfamPF008473.6E-84584IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-1745100IPR016177DNA-binding domain
PROSITE profilePS5103217.8334598IPR001471AP2/ERF domain
PRINTSPR003671.1E-114657IPR001471AP2/ERF domain
PRINTSPR003671.1E-1180100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
LQISLPRRPS GPNLGNPKKT EWTQFGKQDP NPPVVLSENQ PEKKHYRGVR QRPWGKFAAK  60
IRDPKRGSRV WLGTFDTAKA YDRATFRLCG SKAILNFPLE ASAVEEVADA EGEKKQRREE  120
EEVEEVKPVV KKEKTTEQEV KCFREFSEVP KVANFLSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-2644105470ATERF1
3gcc_A6e-2644105470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang03g15530.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017422112.14e-57PREDICTED: ethylene-responsive transcription factor 5
SwissprotO803413e-39EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBLA0A0L9VFB34e-88A0A0L9VFB3_PHAAN; Uncharacterized protein
STRINGGLYMA17G15460.19e-47(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-35ethylene responsive element binding factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]