PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0410s00030.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

NAC

Protein Properties

Length: 163aa MW: 18761.5 Da PI: 9.85

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0410s00030.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	128.9	3.8e-40	28	148	3	119
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrFhPtdeelv++yL++k+++k++++ + ik++diyk++Pw+Lp + + +++eke yfF +r +ky+++ r+nrat sg+Wkatg dk+ + Vang0410s00030.1 28 PGFRFHPTDEELVSFYLRRKLHKKPINI-DLIKQIDIYKYDPWNLPtEnNGSGGEKEGYFFYRRGRKYRNSIRPNRATGSGFWKATGIDKPGY 119 9*************************.99***********532444477899********************************* PP NAM 94 sk...kgelvglkktLvfykgrapkgekt 119 s+ ++ +glkktLv+y++++ kg+kt Vang0410s00030.1 120 SQggeGNDCIGLKKTLVYYRASTGKGTKT 148 96655555*********9999999998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.141	26	162	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-39	27	148	IPR003441	NAC domain
Pfam	PF02365	1.6E-19	28	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MNFNEEELRV DLETLLVNNE FICEIPLPGF RFHPTDEELV SFYLRRKLHK KPINIDLIKQ 60 IDIYKYDPWN LPTENNGSGG EKEGYFFYRR GRKYRNSIRP NRATGSGFWK ATGIDKPGYS 120 QGGEGNDCIG LKKTLVYYRA STGKGTKTYK LLLIRKVIVS TI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-34	28	148	19	133	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-34	28	148	19	133	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-34	28	148	19	133	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-34	28	148	19	133	NO APICAL MERISTEM PROTEIN
3swm_A	5e-34	28	148	22	136	NAC domain-containing protein 19
3swm_B	5e-34	28	148	22	136	NAC domain-containing protein 19
3swm_C	5e-34	28	148	22	136	NAC domain-containing protein 19
3swm_D	5e-34	28	148	22	136	NAC domain-containing protein 19
3swp_A	5e-34	28	148	22	136	NAC domain-containing protein 19
3swp_B	5e-34	28	148	22	136	NAC domain-containing protein 19
3swp_C	5e-34	28	148	22	136	NAC domain-containing protein 19
3swp_D	5e-34	28	148	22	136	NAC domain-containing protein 19
3ulx_A	5e-34	28	148	17	131	Stress-induced transcription factor NAC1
4dul_A	5e-34	28	148	19	133	NAC domain-containing protein 19
4dul_B	5e-34	28	148	19	133	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0410s00030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015039	1e-150	AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017431950.1	1e-101	PREDICTED: transcription factor JUNGBRUNNEN 1-like
Swissprot	Q9SK55	5e-56	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A1S3U495	2e-75	A0A1S3U495_VIGRR; transcription factor JUNGBRUNNEN 1
STRING	XP_007149303.1	5e-75	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1013	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	3e-49	NAC domain containing protein 42

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]