PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0459s00010.1
Common NameLR48_Vigan05g079700
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 300aa    MW: 33922.9 Da    PI: 6.0443
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0459s00010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY70.52.3e-22133193259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dgy WrKYGqK+  ++++ r YYrCt++   gCp++k+v+r +e+p +  +tY g+Hn++
  Vang0459s00010.1 133 EDGYIWRKYGQKMTINAKYLRTYYRCTHKydqGCPATKQVQRIQENPPLYRTTYYGHHNCK 193
                       8***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-24122195IPR003657WRKY domain
PROSITE profilePS5081121.666127195IPR003657WRKY domain
SuperFamilySSF1182901.96E-23129195IPR003657WRKY domain
SMARTSM007743.2E-34132194IPR003657WRKY domain
PfamPF031061.9E-22133193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MENQASNGRK AMEEELNKGR DTANQLLEIL VHKSNTSHTD AEVEGLVLPS AEDLARKVLR  60
SFSNTLLLLS TQSDVSDGLV MPVTVNDVSS SLICPNLEDK DGVCKSSINA KRRRISHKRN  120
APTWEKNSSH LIEDGYIWRK YGQKMTINAK YLRTYYRCTH KYDQGCPATK QVQRIQENPP  180
LYRTTYYGHH NCKSPEIMLE PASSSSDSCM FLSFSTTFPT KEKYQFSSSV FSSTKQEPME  240
VIPDDCGIHN QLPSSDYNLL SDYELDFNCL RHDTVQSMPS STESFLFDKV YGSDMDFDG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A8e-19132193869OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110114KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang0459s00010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017423516.10.0PREDICTED: probable WRKY transcription factor 62
TrEMBLA0A0L9UKA50.0A0A0L9UKA5_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SIN40.0A0A0S3SIN4_PHAAN; Uncharacterized protein
STRINGXP_007149557.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.11e-28WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]