PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang0471s00140.1

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

YABBY

Protein Properties

Length: 117aa MW: 12938.3 Da PI: 9.5046

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang0471s00140.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	88.6	1.7e-27	6	68	5	68
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslk 68 ++e+vCyv+CnfCnt lavsvP +s++++vtvrCGhC++llsvn+ + q ++++ + + + Vang0471s00140.1 6 MATERVCYVHCNFCNTTLAVSVPCSSMLTIVTVRCGHCANLLSVNMGASLQPFPSQET-QLQRR 68 679***********************************************99999875.44433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.0E-29	7	69	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MSMDMMATER VCYVHCNFCN TTLAVSVPCS SMLTIVTVRC GHCANLLSVN MGASLQPFPS 60 QETQLQRRDS VFLRLITGSL KRKYKELRPV IQISATEKLL ARLQKTGHIS LTFTLG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang0471s00140.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095127	7e-82	BT095127.1 Soybean clone JCVI-FLGm-6F4 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017424141.1	3e-43	PREDICTED: putative axial regulator YABBY 2 isoform X2
TrEMBL	A0A4D6N9P5	2e-41	A0A4D6N9P5_VIGUN; Uncharacterized protein
STRING	XP_007150001.1	3e-39	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-25	YABBY family protein