PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g00270.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WRKY
Protein Properties Length: 527aa    MW: 57590.2 Da    PI: 7.9453
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g00270.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.94.4e-33224281260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+ +C vkkkver+  d++++ei+Y+g+Hnhek
  Vang04g00270.1 224 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAP-DGHITEIIYKGQHNHEK 281
                     8****************************************.***************85 PP
2WRKY107.28.1e-34412470159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  Vang04g00270.1 412 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 470
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.0E-29211283IPR003657WRKY domain
PROSITE profilePS5081123.789218282IPR003657WRKY domain
SuperFamilySSF1182906.41E-26222282IPR003657WRKY domain
SMARTSM007741.2E-36223281IPR003657WRKY domain
PfamPF031066.8E-25224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-37397472IPR003657WRKY domain
SuperFamilySSF1182901.31E-29404472IPR003657WRKY domain
PROSITE profilePS5081139.192407472IPR003657WRKY domain
SMARTSM007749.6E-40412471IPR003657WRKY domain
PfamPF031061.9E-26413470IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MSTPNADSGM APHPRPTITL PPRPSAEAFF SAAGGASPGP MTLVSSFFGS DAAADCRSFS  60
QLLAGAMASP MAFSATVADN SDKDDDGPHK GFKQSRPMNL VIARSPVFTV PPGLSPSGFL  120
NSPGFFSPQS PFGMSHQQAL AQVTAQAVLA QSHMHMQADY QMHPVTAPTE PPVQQPSFAL  180
NEASEQKIVP SVSEAKNAQL ETSDISQADK KYQLASQAID KPADDGYNWR KYGQKQVKGS  240
EYPRSYYKCT HLNCLVKKKV ERAPDGHITE IIYKGQHNHE KPQANRRVKD NSDSNGSAIV  300
QPKSESNSQG WVGQQVNKFS ENIPDCSVPE SDQISNQGAP RQLLPGSSGS EEVGDVDNRE  360
EADDIEPNPK RRQAKFLLFR NTDVAVSEVP LSQKTVTEPK IIVQTRSEVD LLDDGYRWRK  420
YGQKVVKGNP HPRSYYKCTS AGCNVRKHVE RASTDPKAVI TTYEGKHNHD VPAARNSSHN  480
TANTNSVPLK PHNVVPEKHP LLKDMDFGSN DQRPVHLRLK EEQIIV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40224473878Probable WRKY transcription factor 4
2lex_A2e-40224473878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g00270.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418807.10.0PREDICTED: probable WRKY transcription factor 4
SwissprotQ9XI901e-143WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A0S3RRX90.0A0A0S3RRX9_PHAAN; Uncharacterized protein
STRINGXP_007139560.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.11e-125WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]