PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g00390.1
Common NameLR48_Vigan03g021600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 244aa    MW: 27860.6 Da    PI: 8.7275
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g00390.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.9e-162471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++ Ed ll ++v+++G g W++++++ g++R++k+c++rw++yl
   Vang04g00390.1 24 KGAWSQTEDGLLRECVQLYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding46.39.9e-1577121147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg ++++E +l ++++k+lG++ W++Ia +++ gRt +++k++w++ 
   Vang04g00390.1  77 RGDFSEDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTN 121
                      899*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6641971IPR017930Myb domain
SuperFamilySSF466891.37E-2721118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-212174IPR009057Homeodomain-like
SMARTSM007178.5E-132373IPR001005SANT/Myb domain
PfamPF002492.2E-152471IPR001005SANT/Myb domain
CDDcd001673.65E-82671No hitNo description
PROSITE profilePS5129424.07372126IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2275126IPR009057Homeodomain-like
SMARTSM007176.9E-1476124IPR001005SANT/Myb domain
PfamPF002494.3E-1377120IPR001005SANT/Myb domain
CDDcd001674.88E-980122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MYQVMTSVKA ACVMMEGRVS GVRKGAWSQT EDGLLRECVQ LYGEGKWHLV PQRAGLNRCR  60
KSCRLRWLNY LKPNIKRGDF SEDEVDLMIR LHKLLGNRWS LIAGRLPGRT SNDVKNYWNT  120
NMRRKVQSHN RDEENNNNNV KESERSWKPH KVIKPVPRAL AKASAMVHGK LMSSSKVGVS  180
EAVSAGSENW WETLLDDKEE NINNSTCFPV GKDGSFELWD EELVSIPSEF FAEAETWSDF  240
LLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-25191282110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g00390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416381.11e-168PREDICTED: transcription factor MYB90-like
SwissprotQ9FNV93e-56MY113_ARATH; Transcription factor MYB113
TrEMBLA0A0L9U2221e-177A0A0L9U222_PHAAN; Uncharacterized protein
STRINGXP_007139536.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]