PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g01260.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family NF-YC
Protein Properties Length: 462aa    MW: 52277.1 Da    PI: 6.3456
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g01260.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC118.62.8e-37215316299
           NF-YC   2 lksfwekq...iekatdfk.nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     l+sfwekq   i+ a+ fk +h+lPlari++i+k+d dv+m+sae+P+l+skace+fi elt r+w++aee++++t++ +d+a+++ + +  +fl
  Vang04g01260.1 215 LRSFWEKQlmdIQAAEAFKsQHKLPLARIRRIMKTDADVQMVSAETPMLMSKACEIFIQELTYRAWMRAEESNKSTVQPCDVAKVIMQNHAMQFL 309
                     89******977788999*999************************************************************************** PP

           NF-YC  93 vdivprd 99 
                     +divp +
  Vang04g01260.1 310 TDIVPDN 316
                     ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.18E-23183308IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.3E-28232300IPR009072Histone-fold
PfamPF008089.5E-17237299IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MLPNSVLRPS CTMSGYLQED REVSNFNLPL DCNNNSVPSN SMSMTPYTMP QFRQDREQRS  60
SSNLLPSSLL PNSIQNPFHP MFEYCQQDRE ANNFILPTDF NNNLASSNMV SNFMSNPFYS  120
MPQYNEEHRQ GSNCNQAMDF HSNSVSSNVV SNSMLVPSCP ILHYHQEKDR ERRNTFNLPL  180
EFNSNSASTN VSNSSSMPSY PVPQYRPQNI QEGKLRSFWE KQLMDIQAAE AFKSQHKLPL  240
ARIRRIMKTD ADVQMVSAET PMLMSKACEI FIQELTYRAW MRAEESNKST VQPCDVAKVI  300
MQNHAMQFLT DIVPDNLQNF CAYGAQEERT AGNIAEGRHP SQATLPDTAG FMGNPMNVMN  360
MGRVRLGGRK PADSSTQQHD AASLCYAFRS ISLQFSSQVN LGMHYGEMNE VMVCSRTMSS  420
LEELEQQFTL LILLKQLLNL FSVLGNIILL KYLTSSCLNI Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C5e-2421531419118HapE
4g92_C5e-2421531419118HapE
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g01260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-119AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408970.10.0PREDICTED: nuclear transcription factor Y subunit gamma-like isoform X2
TrEMBLA0A0S3RQZ90.0A0A0S3RQZ9_PHAAN; Uncharacterized protein
STRINGXP_007139192.11e-134(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1821366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.33e-30nuclear factor Y, subunit C3