PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g02420.1

Common Name

LR48_Vigan03g007300

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

TCP

Protein Properties

Length: 277aa MW: 30448 Da PI: 8.4754

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g02420.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.5	6.6e-40	98	202	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....... 88 ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t++WL++++k+aikelt+++ s+ s+ +++s+ + ++ + Vang04g02420.1 98 TAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKELTRSKHSADSFEfSSSSDDVDGGV---Prdddfnv 189 78**************************************************************66655333222222222221...12223444 PP TCP 89 ............k 89 + Vang04g02420.1 190 ieesivikrklkH 202 4444444433330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.6E-37	98	180	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	36.401	100	158	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MFPSSNYTSS GSYPRFPSSS SSAAPYPSFT FLHPENSSAS TTFLHDPLSV TFIPTNYHAP 60 IPETLANWAV ADCAAAAMLN QDLGGALYGI TKKPAKKTAK KDRHSKIHTS QGLRDRRVRL 120 SIEIARKFFD LQDMLGFDKA SNTLDWLFTK SKKAIKELTR SKHSADSFEF SSSSDDVDGG 180 VPRDDDFNVI EESIVIKRKL KHSLMSSIHH QNAVIPKEAS VNNSDYHSFP NLSPNWEANN 240 AANGRSTFCA IASMNLSAGL QIFGKSWEEC TNPHPT*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00215	DAP	Transfer from AT1G67260	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g02420.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022635787.1	2e-88	transcription factor CYCLOIDEA-like isoform X2
TrEMBL	A0A3Q0F078	6e-87	A0A3Q0F078_VIGRR; transcription factor CYCLOIDEA-like isoform X2
STRING	GLYMA08G28691.1	3e-79	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1738	32	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67260.2	2e-27	TCP family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]