PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g03920.1

Common Name

LR48_Vigan03g043900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

WRKY

Protein Properties

Length: 184aa MW: 21053.9 Da PI: 9.61

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g03920.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.7	9.9e-33	104	162	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vk+s++prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Vang04g03920.1 104 LDDGYRWRKYGQKSVKNSTYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 162 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.7E-33	91	162	IPR003657	WRKY domain
SuperFamily	SSF118290	1.83E-28	97	163	IPR003657	WRKY domain
PROSITE profile	PS50811	28.839	99	164	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	104	163	IPR003657	WRKY domain
Pfam	PF03106	6.0E-26	105	162	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
LMESHDLPPR NNPFLFNPLE PQEQGLCDFD SWGNLFSAQN SLLLLNGDAK ETIQRASSSS 60 LMAQNKVVCE EEKGSKEKRK GVRVKKTTRV PRFAFQTRSA DDVLDDGYRW RKYGQKSVKN 120 STYPRSYYRC THHTCNVKKQ VQRLSKDTSI VVTTYEGIHN HPCEKLMETL TPLLKQIQFL 180 ASL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	4e-25	92	161	2	71	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g03920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017418158.1	1e-136	PREDICTED: probable WRKY transcription factor 43
Swissprot	Q9FFS3	3e-57	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	A0A0L9U2K9	1e-135	A0A0L9U2K9_PHAAN; Uncharacterized protein
STRING	GLYMA18G47350.1	1e-103	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	9e-58	WRKY DNA-binding protein 24

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]