PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g04640.1
Common NameLR48_Vigan03g036600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 230aa    MW: 26185.1 Da    PI: 7.8004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g04640.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-094794355
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    + h ++Er+RR+++  ++  L   +P +     k+++Ka +L++Av+Y ++Lq
  Vang04g04640.1 47 QHHIIAERKRRQELTGSIIALSATIPGL-----KRMDKAYVLREAVNYTRQLQ 94
                    6799************************.....89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.374493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-1447112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.97E-74798No hitNo description
PfamPF000102.1E-74794IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1348107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-95099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEDSLENWIS DLGSCSKRGG AVVKDGSQFE PVMAQPRKRA RRSCETQHHI IAERKRRQEL  60
TGSIIALSAT IPGLKRMDKA YVLREAVNYT RQLQERVKEL ENKNSEKRVV HHSSTLVRKS  120
EVCSKKSLSN SSENNKESLF EVEARVLDEE ILIGIHCEKQ KDIVCNILAF LEKLHLSPTS  180
SSVLPFGTCT LIIHIIAQMD EECRMNMDEL VKNLREYLLN VYDMQQVSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13656RKRARRSCETQHHIIAERKRR
25257ERKRRQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g04640.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017418113.11e-158PREDICTED: transcription factor bHLH18-like isoform X1
TrEMBLA0A0L9U2I21e-157A0A0L9U2I2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RSA01e-157A0A0S3RSA0_PHAAN; Uncharacterized protein
STRINGGLYMA18G48126.14e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-38bHLH family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]