PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g04780.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 231aa    MW: 25864.4 Da    PI: 10.0442
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g04780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1163110254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+ h  +Er+RR+++ + + eL  ++P +     kK +K +++++Av+Y+k L
  Vang04g04780.1  63 RQHHILAERKRREELTKNIVELSAIIPGL-----KKRDKGSVVREAVDYVKRL 110
                     999**************************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.3E-1360115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.14561110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1461125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-963110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.23E-963115No hitNo description
SMARTSM003539.8E-967116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MIVFSHESNI PSSSSLQSNL NSKTSSFSAG HDLCFDNPNS EAHQNHSSKS TTQSQNAIPR  60
ANRQHHILAE RKRREELTKN IVELSAIIPG LKKRDKGSVV REAVDYVKRL KERVKELENQ  120
KRENTNSRSL TKKPTSVEEE LPEMKISVSD REVLIGIFCH NPNNTLVKVL SLLDNLHLST  180
RCSSVLPFGT STFKVTIIAK MNDEYSMTID DLIKEVGGRL LSLKSQKVVK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERKRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g04780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-180AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416413.11e-166PREDICTED: transcription factor bHLH18-like
TrEMBLA0A445J5P46e-69A0A445J5P4_GLYSO; Transcription factor bHLH25
STRINGGLYMA18G48143.14e-54(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1872846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-35bHLH family protein