PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g05040.1
Common NameLR48_Vigan03g030100
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 166aa    MW: 18547.6 Da    PI: 6.6897
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g05040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1859109155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ykGVr++   g+++AeI+dp+   k+ r++lg+++t+eeAa a+++a+ k++g
  Vang04g05040.1  59 TRYKGVRRRA-HGKFAAEIKDPN---KSNRVWLGTYDTEEEAALAYDNAAFKIRG 109
                     68*****887.8*********93...369************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1459109IPR001471AP2/ERF domain
CDDcd000183.77E-2959119No hitNo description
PROSITE profilePS5103222.37960117IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-2960118IPR001471AP2/ERF domain
SMARTSM003801.8E-3360123IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2160118IPR016177DNA-binding domain
PRINTSPR003671.4E-106172IPR001471AP2/ERF domain
PRINTSPR003671.4E-1099119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MDTYNGINAT SEFDMTFLDT IEHYMVHDGL NDNNNVFVSN EDWFSEKGDK AEEVVPRGTR  60
YKGVRRRAHG KFAAEIKDPN KSNRVWLGTY DTEEEAALAY DNAAFKIRGS KAKLNFPHLI  120
PPLDEPTTTI DQSPSSSSST SQDPSKKRKG LAGLLNKLAH EKNRI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2257117263ATERF1
3gcc_A4e-2257117263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate. {ECO:0000250, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g05040.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Highly and transiently expressed in tobacco mosaic virus (TMV) infected leaves. Induced by methyl-jasmonate (MeJA), and by ethephon (ethylene-releasing compound) in buds and to lower extent in leaves. Quickly and transiently induced by salicylic acid (SA). Strongly induced by wounding, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by MeJA. Also induced by acetyl salicylic acid (ASA), cycloheximide, auxin (2,4-D), and benzoic acid (BA) but seems to not be influenced by 4-hydroxybenzoic acid (4HBA), thiamine, H(2)O(2) or abscisic acid (ABA). {ECO:0000269|PubMed:7756828, ECO:0000269|PubMed:9725022, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416403.11e-121PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ404764e-29ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A0L9U2A51e-120A0A0L9U2A5_PHAAN; Uncharacterized protein
STRINGXP_007139637.12e-71(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2122744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.19e-29ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]