PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g05220.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family HD-ZIP
Protein Properties Length: 242aa    MW: 26769.9 Da    PI: 7.7247
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g05220.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.4e-1982136256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++tkeq  +Lee F+++++++ ++++ LA++l+L+ rqV vWFqNrRa+ k
  Vang04g05220.1  82 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTK 136
                     678899***********************************************98 PP
2HD-ZIP_I/II128.62.5e-4182172192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rl+keq+ +LEe+F+e+++L+p+rK++la+eL+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+e+n+rL+kev+eLr +lk
  Vang04g05220.1  82 RKKLRLTKEQSMVLEETFKEHNTLNPKRKQALAEELNLKPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEDNRRLQKEVQELR-ALK 172
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046187.1E-91149IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.606.8E-2062136IPR009057Homeodomain-like
SuperFamilySSF466899.41E-2064139IPR009057Homeodomain-like
PROSITE profilePS5007117.34678138IPR001356Homeobox domain
SMARTSM003893.6E-1780142IPR001356Homeobox domain
CDDcd000865.94E-1782139No hitNo description
PfamPF000465.5E-1782136IPR001356Homeobox domain
PROSITE patternPS000270113136IPR017970Homeobox, conserved site
SMARTSM003406.6E-26138181IPR003106Leucine zipper, homeobox-associated
PfamPF021839.3E-12138172IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MSVDHPDRSS DVIRGVDVKS TVECEEDNGI SSPNSAVSSV SGGKRSERDD DNAALVASGE  60
RTSCSRGSDD DDGGGGDCEG GRKKLRLTKE QSMVLEETFK EHNTLNPKRK QALAEELNLK  120
PRQVEVWFQN RRARTKLKQT EVDCEYLKRC CENLTEDNRR LQKEVQELRA LKSSPQMYMH  180
MNPPTTLTMC PSCERGHSSS TSSPAAVHPV VPPTSRKLFG ANIRRPVAVN TWPFDGSIPR  240
P*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130138RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g05220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017417381.11e-174PREDICTED: homeobox-leucine zipper protein HAT3-like
SwissprotP466025e-83HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A0S3RS741e-174A0A0S3RS74_PHAAN; Uncharacterized protein
STRINGXP_007139620.11e-127(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.12e-69homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]