PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g06040.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 316aa    MW: 36320.5 Da    PI: 9.3665
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g06040.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.23.8e-084489346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ eE +++  a + + ++   +W ++a++++ gR+ ++++  ++ 
   Vang04g06040.1 44 EWSREENKQFESALAIYDKDtpdRWLRVAAMLP-GRSVYDVIKQYRE 89
                     6********************************.********99986 PP
2Myb_DNA-binding40.75.5e-13144188347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r++  ++t+ q+ s+ qky
   Vang04g06040.1 144 PWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKY 188
                      8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0664095IPR017884SANT domain
SMARTSM007172.9E-84193IPR001005SANT/Myb domain
SuperFamilySSF466897.03E-114494IPR009057Homeodomain-like
PfamPF002493.2E-64489IPR001005SANT/Myb domain
CDDcd001671.01E-64490No hitNo description
Gene3DG3DSA:1.10.10.601.6E-10135189IPR009057Homeodomain-like
PROSITE profilePS5129419.139137193IPR017930Myb domain
SuperFamilySSF466896.8E-16139193IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-16140192IPR006447Myb domain, plants
SMARTSM007175.6E-11141191IPR001005SANT/Myb domain
CDDcd001671.48E-8144188No hitNo description
PfamPF002494.4E-11144188IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MQVHHDFSRF PSILKGRFFS LCSHRNFSFI SSVGEFCCKG HYTEWSREEN KQFESALAIY  60
DKDTPDRWLR VAAMLPGRSV YDVIKQYREL EEDVGEIEAG RIPIPGYLTS SFSLEMVDNQ  120
CYDACGKKSA TVRSSDQEKK KGVPWTEEEH RRFLMGLLKY GKGDWRNISR KFVITKTPTQ  180
VASHAQKYYI RQKLSGGKYN KRRPSIHDIT IVNLTSHQEK FNESHMPSEK LKLNSMPKVQ  240
LEWINRHNNI GSLVAFNPNY DMLMSPSSGI VSPKTLKLQG LDFYECAFHE TYAKLKNPGF  300
NKEAIFGIHA LSCPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1739110576RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g06040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416957.10.0PREDICTED: transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H72e-79DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0L9U9E80.0A0A0L9U9E8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZE70.0A0A0S3RZE7_PHAAN; Uncharacterized protein
STRINGXP_007163513.11e-180(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-82MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]