PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g06040.2
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 330aa    MW: 37928.2 Da    PI: 8.5237
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g06040.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-0858103346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                       W+ eE +++  a + + ++   +W ++a++++ gR+ ++++  ++ 
   Vang04g06040.2  58 EWSREENKQFESALAIYDKDtpdRWLRVAAMLP-GRSVYDVIKQYRE 103
                      6********************************.********99986 PP
2Myb_DNA-binding40.65.9e-13158202347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r++  ++t+ q+ s+ qky
   Vang04g06040.2 158 PWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKY 202
                      8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.06654109IPR017884SANT domain
SMARTSM007172.9E-855107IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-1158108IPR009057Homeodomain-like
PfamPF002493.4E-658103IPR001005SANT/Myb domain
CDDcd001671.01E-658104No hitNo description
Gene3DG3DSA:1.10.10.601.7E-10149203IPR009057Homeodomain-like
PROSITE profilePS5129419.139151207IPR017930Myb domain
SuperFamilySSF466897.25E-16153207IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-16154206IPR006447Myb domain, plants
SMARTSM007175.6E-11155205IPR001005SANT/Myb domain
CDDcd001671.49E-8158202No hitNo description
PfamPF002494.7E-11158202IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MIYIYPKPFL SHTSSCFSFL VKTTQELPTD ASMEFETPYP TCFVSNSNWF VQEGHYTEWS  60
REENKQFESA LAIYDKDTPD RWLRVAAMLP GRSVYDVIKQ YRELEEDVGE IEAGRIPIPG  120
YLTSSFSLEM VDNQCYDACG KKSATVRSSD QEKKKGVPWT EEEHRRFLMG LLKYGKGDWR  180
NISRKFVITK TPTQVASHAQ KYYIRQKLSG GKYNKRRPSI HDITIVNLTS HQEKFNESHM  240
PSEKLKLNSM PKVQLEWINR HNNIGSLVAF NPNYDMLMSP SSGIVSPKTL KLQGLDFYEC  300
AFHETYAKLK NPGFNKEAIF GIHALSCPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-17591241176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g06040.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416957.10.0PREDICTED: transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H78e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0L9U9E80.0A0A0L9U9E8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZE70.0A0A0S3RZE7_PHAAN; Uncharacterized protein
STRINGXP_007163513.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-87MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]