PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g06040.3
Common NameLR48_Vigan03g251600
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB
Protein Properties Length: 298aa    MW: 34293 Da    PI: 8.64
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g06040.3genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-082671346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      W+ eE +++  a + + ++   +W ++a++++ gR+ ++++  ++ 
   Vang04g06040.3 26 EWSREENKQFESALAIYDKDtpdRWLRVAAMLP-GRSVYDVIKQYRE 71
                     6********************************.********99986 PP
2Myb_DNA-binding40.85e-13126170347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ +  ++G+g+W+ I+r++  ++t+ q+ s+ qky
   Vang04g06040.3 126 PWTEEEHRRFLMGLLKYGKGDWRNISRKFVITKTPTQVASHAQKY 170
                      8*****************************889***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.0662277IPR017884SANT domain
SMARTSM007172.9E-82375IPR001005SANT/Myb domain
PfamPF002492.9E-62671IPR001005SANT/Myb domain
CDDcd001671.34E-62672No hitNo description
SuperFamilySSF466896.43E-112676IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-10117171IPR009057Homeodomain-like
PROSITE profilePS5129419.139119175IPR017930Myb domain
SuperFamilySSF466896.13E-16121175IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-16122174IPR006447Myb domain, plants
SMARTSM007175.6E-11123173IPR001005SANT/Myb domain
PfamPF002494.1E-11126170IPR001005SANT/Myb domain
CDDcd001672.09E-8126170No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFETPYPTC FVSNSNWFVQ EGHYTEWSRE ENKQFESALA IYDKDTPDRW LRVAAMLPGR  60
SVYDVIKQYR ELEEDVGEIE AGRIPIPGYL TSSFSLEMVD NQCYDACGKK SATVRSSDQE  120
KKKGVPWTEE EHRRFLMGLL KYGKGDWRNI SRKFVITKTP TQVASHAQKY YIRQKLSGGK  180
YNKRRPSIHD ITIVNLTSHQ EKFNESHMPS EKLKLNSMPK VQLEWINRHN NIGSLVAFNP  240
NYDMLMSPSS GIVSPKTLKL QGLDFYECAF HETYAKLKNP GFNKEAIFGI HALSCPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1727971181RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g06040.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017416957.10.0PREDICTED: transcription factor DIVARICATA-like isoform X1
SwissprotQ8S9H74e-81DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0L9U9E80.0A0A0L9U9E8_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RZE70.0A0A0S3RZE7_PHAAN; Uncharacterized protein
STRINGXP_007163513.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-87MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]