PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g06390.2
Common NameLR48_Vigan470s000800
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family BES1
Protein Properties Length: 670aa    MW: 75326.3 Da    PI: 7.3961
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g06390.2genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822150.11.8e-46451861135
          DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas..as 89 
                     gg++r+++ +E+E++k+RERrRRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++   +g+kp   ++ +  ss+s  as
  Vang04g06390.2  45 GGTRRSRPVEEKERTKLRERRRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGQKPAgGNSTILTSSSShvAS 139
                     5899*****************************************************************98889999998455544444333488 PP

          DUF822  90 pesslq.sslkssalaspvesysaspksssfpspssldsislasaas 135
                     +++++  ++ ++s  +sp+e +++++k + +p ps +d  s++ +++
  Vang04g06390.2 140 QQTPSPsLRGVASGYRSPLEYSACQTKGVFMPTPSPYDLSSTSRSQT 186
                     888877789999**************************988775544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056872.0E-4046182IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514451.31E-178228665IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.801.9E-194229663IPR013781Glycoside hydrolase, catalytic domain
PfamPF013735.8E-102235654IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64266280IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64287305IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64309330IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.5E-6392401IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR007507.0E-64402424IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64475494IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64509525IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64526537IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64544567IPR001554Glycoside hydrolase, family 14
PRINTSPR007507.0E-64584606IPR001554Glycoside hydrolase, family 14
PRINTSPR008422.5E-6635649IPR001371Glycoside hydrolase, family 14B, plant
PRINTSPR008422.5E-6650664IPR001371Glycoside hydrolase, family 14B, plant
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
LKISVRRRQI CRIICFDFQF GGTATGDNRF AQHQQFHEQA GTPGGGTRRS RPVEEKERTK  60
LRERRRRAIT ARILAGLRRH GNYNLRVRAD INDVIAALAR EAGWVVLPDG TTFPSRSQGQ  120
KPAGGNSTIL TSSSSHVASQ QTPSPSLRGV ASGYRSPLEY SACQTKGVFM PTPSPYDLSS  180
TSRSQTSIVG DGEAQRDNHP LISGSIDNAD EKQIADLPAR LPERDLAGTP YVPVYVMLPL  240
GVINIKCELV DPDGLLKQLR VLKSVHVDGV MVDCWWGIVE AHAPQEYNWN GYKRLFQMVR  300
EVKLKLQVVM SFHECGGNFG DDVCIPLPHW VAEIGRSNPD IFFTDREGRH NPECLSWGID  360
KERVLRGRTA VEVYFDFMRS FRVEFDEYFE DGLISMIEVG LGPCGELRYP SCPVKHGWRY  420
PGIGEFQCYD QYMLKSLRKA AEARGHAIWA RGPDNAGTYN SQPHETGFFC DGGDYDGFYG  480
RFFLSWYSQV LVDHGNRVLS LAKLAFEGSC VTAKLAGIYW WYKTASHATE LTAGYYNPCN  540
RDGYAAIMTM LKINGVSLNI PCVELHTLNQ HEGFPETFAD PEGLVWQVLN AGWDVDLPVT  600
SQNGFPCLNR VSYNKVLDHA KPMNDPDGRH FSSFTYLRLS PLLMERQNFI EFERFVKRMH  660
GEAVLDLQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1v3i_A1e-14623166211444Beta-amylase
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g06390.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017408330.10.0PREDICTED: beta-amylase 7 isoform X1
SwissprotO808310.0BAM7_ARATH; Beta-amylase 7
TrEMBLA0A0L9TBI90.0A0A0L9TBI9_PHAAN; Beta-amylase
STRINGXP_007139874.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108833339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45880.10.0beta-amylase 7
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]