PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g07780.1
Common NameLR48_Vigan03g067400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GRAS
Protein Properties Length: 526aa    MW: 57477.8 Da    PI: 6.5088
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g07780.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS393.52.3e-12016851213374
            GRAS  13 ssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107
                     s+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp +++s     ++++a+++f+ +sP++kfsh+taNqaI ea+e
  Vang04g07780.1 168 SAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQS----HKVASAFQVFNGISPFVKFSHFTANQAIQEAFE 258
                     5789*********************************************999988885....89999**************************** PP

            GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                     +eervHiiD+di+qGlQWp L+  LasRp+g+p +R+Tg+g     s e+le+tg+rL++fA++lg+pfef + va+++ +l++e+L+v++ Ea+
  Vang04g07780.1 259 REERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGT----SMEALEATGKRLSDFANKLGLPFEFFP-VAEKVGNLDPERLNVSKTEAV 348
                     ******************************************....***************************.7******************** PP

            GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                     aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ ns+sFl rf+ea++yysalfdsl +++++eseer++vE++ll+rei+nv
  Vang04g07780.1 349 AVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NSGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNV 436
                     *****9..999999999999....*******************97.79*********************************************** PP

            GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +a  g +r+ + + +++Wre+++++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lgWkd  L+++SaWr
  Vang04g07780.1 437 LAVGGPSRTGEPK-FHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 512
                     *******998887.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098553.767131492IPR005202Transcription factor GRAS
PfamPF035147.8E-118168512IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MAACALFSAA TNITEDGNVN NATASAASPL TSASNSSNMS NDDQHTLHGI VPQPHCERKI  60
VRKRMASEMD HLNVHLTPPH NSSSTTDYPS SNSVSIPQLI SNVREIIYPC NPNLATILEY  120
RLRLLTESAP QNKRGTEGVP LPPSVSSVKL VNNRVDGIVP NLHFTDGSAE NLEDANKMLL  180
EISQLSTPFG TSAQRVAAYF SEAISARLVS SCLGIYATLP HTHQSHKVAS AFQVFNGISP  240
FVKFSHFTAN QAIQEAFERE ERVHIIDLDI MQGLQWPGLF YILASRPGGA PYVRLTGLGT  300
SMEALEATGK RLSDFANKLG LPFEFFPVAE KVGNLDPERL NVSKTEAVAV HWLQHSLYDV  360
TGSDTNTLWL LQRLAPKVVT VVEQDLSNSG SFLGRFVEAI HYYSALFDSL GSSYGEESEE  420
RHVVEQQLLS REIRNVLAVG GPSRTGEPKF HNWREKFQQC GFRGISLAGN AATQASLLLG  480
MFPSEGYTLV EDNGILKLGW KDLCLLTASA WRPPFHSGTA ITHHN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.016851331380Protein SCARECROW
5b3h_A0.016851330379Protein SCARECROW
5b3h_D0.016851330379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g07780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017419163.10.0PREDICTED: protein SCARECROW-like isoform X1
RefseqXP_027928899.10.0protein SCARECROW isoform X2
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A0L9U3930.0A0A0L9U393_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RTA80.0A0A0S3RTA8_PHAAN; Uncharacterized protein
STRINGXP_007140014.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]