PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang04g07890.1
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family WOX
Protein Properties Length: 121aa    MW: 13973.9 Da    PI: 9.3764
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang04g07890.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.32.3e-071481557
                    HHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox 15 LeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    Le+lF+   r+p++e+  e+A++l    ++ e +V+  FqN  ++ek+
  Vang04g07890.1  1 LEALFAFgIRNPNREQVHEIATRLkvymEIGEYNVYCLFQNYGYREKQ 48
                    89****88**********************************999996 PP
2Wus_type_Homeobox44.53.7e-151491664
  Wus_type_Homeobox 16 LeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       Le+l+  G+r+Pn+e++++i+++L+ y +i++ NV+  FQN   Re+q+
     Vang04g07890.1  1 LEALFAFGIRNPNREQVHEIATRLKVYMEIGEYNVYCLFQNYGYREKQR 49
                       899********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000467.0E-5148IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
LEALFAFGIR NPNREQVHEI ATRLKVYMEI GEYNVYCLFQ NYGYREKQRC LKRSIASTSY  60
SPIPLLPPFM DGKKNGNYYF FFLFSNISIF IFFRSFKDNA NSARSSDTRS LSDPTCSSQS  120
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang04g07890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017420310.13e-40PREDICTED: WUSCHEL-related homeobox 4-like
TrEMBLA0A0L9U3771e-45A0A0L9U377_PHAAN; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05770.13e-09WUSCHEL related homeobox 7