PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g08810.1

Common Name

LR48_Vigan03g082800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 549aa MW: 61509 Da PI: 4.5483

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g08810.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	121.8	8.4e-38	180	547	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL + ea+++g+++la+ +L +s+ asp g++++Rl++y+ + + ++ l+ ++ + + aal+++++ P+ k++h++ Vang04g08810.1 180 HLLEAHGEALEQGQKSLAEVILRCMSQKASPLGESLERLVFYLSQSMTNHGDY--------LKGEAFK-----NYEAALRALYQGLPVGKVAHFA 261 67777889********************************99999887665........5555554.....45568899********** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak 184 a +aIlea+ ++ + vHi+D +++G+QW+++++a+a + ++++T ++ + g + eet+++L ++A+++g++++ + k Vang04g08810.1 262 AVSAILEAMPQDcNSVHIVDSCVGHGFQWVPMIEAIAHMN---KTVKLTSIKWDDDGeglecfsTPSNFEETKRQLCEYAKSCGLKLKVEE---K 350 *****9888********************965...56***9887799999988999***************9987...4 PP GRAS 185 rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadh...nsesFlerflealeyysal 267 +++l e+++++ + gE la n+++ l ++ +es + e++++ +l + ++++ + a n+ +F f le+y al Vang04g08810.1 351 GVKELvaEIKKMNKRGgrGEFLAFNSMIDLPHMGRESSRKQA--LEFVRVAEDLintsgNRGIITFGDGSAYEkvkNNLNFRSFFKAHLEHYQAL 443 455542245555444477***********966655555..77888777764443355699999977432235999************ PP GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslv 359 ++++e+ +p+ e+ri +E+ +l++ i+++ ++ e ++++ e Fk +ls+++ ++++ +l + s r+e +++++lv Vang04g08810.1 444 LEAIESHFPTRFsEARIAMEQLFLQPCISSLDWLQTWE------EMHSGDPLEAEISFKGCQLSKNILMEIREVLGGSEgSYQARIEgQNHNELV 532 ***998755***********9998888877......2333344446788*****************96666788878899* PP GRAS 360 lgWkdrpLvsvSaWr 374 l k+ +L+ +S W+ Vang04g08810.1 533 LEYKGTQLLRFSTWK 547 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.291	152	525	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.9E-35	180	547	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
MQQEDMQSPW SFFEGMNSTF ESGVESLGFT VYDHVADCGS YGFTVDDHVD DCGLNTLLST 60 LEDSTSEISS IPFSSSSLFF SNDHVHTQYP INEETLQLPS LMEFDDFDSI MDTEIASIQG 120 HGYIWESEGS FFPPQNLSSE VENAWSPTPS VRSELSTNQA SPLTLPHQNM EIENQVSLPH 180 LLEAHGEALE QGQKSLAEVI LRCMSQKASP LGESLERLVF YLSQSMTNHG DYLKGEAFKN 240 YEAALRALYQ GLPVGKVAHF AAVSAILEAM PQDCNSVHIV DSCVGHGFQW VPMIEAIAHM 300 NKTVKLTSIK WDDDGEGLEC FSTPSNFEET KRQLCEYAKS CGLKLKVEEK GVKELVAEIK 360 KMNKRGGRGE FLAFNSMIDL PHMGRESSRK QALEFVRVAE DLINTSGNRG IITFGDGSAY 420 EKVKNNLNFR SFFKAHLEHY QALLEAIESH FPTRFSEARI AMEQLFLQPC ISSLDWLQTW 480 EEMHSGDPLE AEISFKGCQL SKNILMEIRE VLGGSEGSYQ ARIEGQNHNE LVLEYKGTQL 540 LRFSTWKN*

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

MQQEDMQSPW SFFEGMNSTF ESGVESLGFT VYDHVADCGS YGFTVDDHVD DCGLNTLLST  60
LEDSTSEISS IPFSSSSLFF SNDHVHTQYP INEETLQLPS LMEFDDFDSI MDTEIASIQG  120
HGYIWESEGS FFPPQNLSSE VENAWSPTPS VRSELSTNQA SPLTLPHQNM EIENQVSLPH  180
LLEAHGEALE QGQKSLAEVI LRCMSQKASP LGESLERLVF YLSQSMTNHG DYLKGEAFKN  240
YEAALRALYQ GLPVGKVAHF AAVSAILEAM PQDCNSVHIV DSCVGHGFQW VPMIEAIAHM  300
NKTVKLTSIK WDDDGEGLEC FSTPSNFEET KRQLCEYAKS CGLKLKVEEK GVKELVAEIK  360
KMNKRGGRGE FLAFNSMIDL PHMGRESSRK QALEFVRVAE DLINTSGNRG IITFGDGSAY  420
EKVKNNLNFR SFFKAHLEHY QALLEAIESH FPTRFSEARI AMEQLFLQPC ISSLDWLQTW  480
EEMHSGDPLE AEISFKGCQL SKNILMEIRE VLGGSEGSYQ ARIEGQNHNE LVLEYKGTQL  540
LRFSTWKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g08810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417857.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0L9U3V4	0.0	A0A0L9U3V4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RU11	0.0	A0A0S3RU11_PHAAN; Uncharacterized protein
STRING	XP_007140222.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-12	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]