PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang04g08810.2

Common Name

LR48_Vigan03g082800

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

GRAS

Protein Properties

Length: 477aa MW: 53509.4 Da PI: 5.0833

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang04g08810.2	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	122.4	5.4e-38	108	475	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 +lL + ea+++g+++la+ +L +s+ asp g++++Rl++y+ + + ++ l+ ++ + + aal+++++ P+ k++h++ Vang04g08810.2 108 HLLEAHGEALEQGQKSLAEVILRCMSQKASPLGESLERLVFYLSQSMTNHGDY--------LKGEAFK-----NYEAALRALYQGLPVGKVAHFA 189 67778889********************************99999887665........5555554.....45568899********** PP GRAS 98 aNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.......skeeleetgerLakfAeelgvpfefnvlvak 184 a +aIlea+ ++ + vHi+D +++G+QW+++++a+a + ++++T ++ + g + eet+++L ++A+++g++++ + k Vang04g08810.2 190 AVSAILEAMPQDcNSVHIVDSCVGHGFQWVPMIEAIAHMN---KTVKLTSIKWDDDGeglecfsTPSNFEETKRQLCEYAKSCGLKLKVEE---K 278 *****9888********************965...56***9887799999988999***************9987...4 PP GRAS 185 rledl..eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvksl.....sPkvvvvveqeadh...nsesFlerflealeyysal 267 +++l e+++++ + gE la n+++ l ++ +es + e++++ +l + ++++ + a n+ +F f le+y al Vang04g08810.2 279 GVKELvaEIKKMNKRGgrGEFLAFNSMIDLPHMGRESSRKQA--LEFVRVAEDLintsgNRGIITFGDGSAYEkvkNNLNFRSFFKAHLEHYQAL 371 455542245555444477***********966655555..77888777764443355699999977432235999************ PP GRAS 268 fdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslv 359 ++++e+ +p+ e+ri +E+ +l++ i+++ ++ e ++++ e Fk +ls+++ ++++ +l + s r+e +++++lv Vang04g08810.2 372 LEAIESHFPTRFsEARIAMEQLFLQPCISSLDWLQTWE------EMHSGDPLEAEISFKGCQLSKNILMEIREVLGGSEgSYQARIEgQNHNELV 460 ***998755***********9998888877......2333344446788*****************96666788878899* PP GRAS 360 lgWkdrpLvsvSaWr 374 l k+ +L+ +S W+ Vang04g08810.2 461 LEYKGTQLLRFSTWK 475 **************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	21.291	80	453	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.9E-35	108	475	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 477 aa Download sequence Send to blast
LLSTLEDSTS EISSIPFSSS SLFFSNDHVH TQYPINEETL QLPSLMECHG YIWESEGSFF 60 PPQNLSSEVE NAWSPTPSVR SELSTNQASP LTLPHQNMEI ENQVSLPHLL EAHGEALEQG 120 QKSLAEVILR CMSQKASPLG ESLERLVFYL SQSMTNHGDY LKGEAFKNYE AALRALYQGL 180 PVGKVAHFAA VSAILEAMPQ DCNSVHIVDS CVGHGFQWVP MIEAIAHMNK TVKLTSIKWD 240 DDGEGLECFS TPSNFEETKR QLCEYAKSCG LKLKVEEKGV KELVAEIKKM NKRGGRGEFL 300 AFNSMIDLPH MGRESSRKQA LEFVRVAEDL INTSGNRGII TFGDGSAYEK VKNNLNFRSF 360 FKAHLEHYQA LLEAIESHFP TRFSEARIAM EQLFLQPCIS SLDWLQTWEE MHSGDPLEAE 420 ISFKGCQLSK NILMEIREVL GGSEGSYQAR IEGQNHNELV LEYKGTQLLR FSTWKN*

Sequence ? help Back to Top

Protein Sequence Length: 477 aa Download sequence Send to blast

LLSTLEDSTS EISSIPFSSS SLFFSNDHVH TQYPINEETL QLPSLMECHG YIWESEGSFF  60
PPQNLSSEVE NAWSPTPSVR SELSTNQASP LTLPHQNMEI ENQVSLPHLL EAHGEALEQG  120
QKSLAEVILR CMSQKASPLG ESLERLVFYL SQSMTNHGDY LKGEAFKNYE AALRALYQGL  180
PVGKVAHFAA VSAILEAMPQ DCNSVHIVDS CVGHGFQWVP MIEAIAHMNK TVKLTSIKWD  240
DDGEGLECFS TPSNFEETKR QLCEYAKSCG LKLKVEEKGV KELVAEIKKM NKRGGRGEFL  300
AFNSMIDLPH MGRESSRKQA LEFVRVAEDL INTSGNRGII TFGDGSAYEK VKNNLNFRSF  360
FKAHLEHYQA LLEAIESHFP TRFSEARIAM EQLFLQPCIS SLDWLQTWEE MHSGDPLEAE  420
ISFKGCQLSK NILMEIREVL GGSEGSYQAR IEGQNHNELV LEYKGTQLLR FSTWKN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang04g08810.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017417857.1	0.0	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A0L9U3V4	0.0	A0A0L9U3V4_PHAAN; Uncharacterized protein
TrEMBL	A0A0S3RU11	0.0	A0A0S3RU11_PHAAN; Uncharacterized protein
STRING	XP_007140222.1	0.0	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	1e-12	GRAS family protein

Publications ? help Back to Top
Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024]